Table 4.
Nucleotide content and gene count levels of the genomes
| Attribute | Pantoea agglomerans MP2 (total) | Pantoea vagans MP7 (total) | ||
|---|---|---|---|---|
| Value | % of totala | Value | % of totala | |
| Genome size (bp) | 4,733,829 | 100 % | 4,598,703 | 100 % |
| DNA coding (bp) | 4,043,819 | 85.4 % | 3,948,783 | 85.9 % |
| DNA G + C (bp) | 2,614,812 | 55.2 % | 2,541,699 | 55.3 % |
| DNA scaffolds | 16 | - | 8 | - |
| Total genesb | 4449 | - | 4277 | - |
| Protein coding genes | 4355 | 100 % | 4181 | 100 % |
| RNA genes | 94 | 2.2 % | 91 | 2.2 % |
| Pseudo genes | - | - | 2 | 0.1 % |
| Genes in internal clusters | - | - | - | - |
| Genes with function prediction | 3470 | 79.7 % | 3351 | 80.1 % |
| Genes assigned to COGs | 3686 | 84.6 % | 3608 | 86.3 % |
| Genes with Pfam domains | 2124 | 48.8 % | 2064 | 49.4 % |
| Genes with signal peptides | 810 | 18.6 % | 768 | 18.4 % |
| Genes with transmembrane helices | 927 | 21.3 % | 906 | 21.7 % |
| CRISPR repeats | 4 | 0.09 % | 3 | 0.07 % |
aThe percentage of total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
bAlso includes pseudogenes and other genes