Table I.
Primer sequences for PCR, MSP and bisulfite sequencing.
Genes | Primer pairs (5′-3′) | Product size (bp) | |
---|---|---|---|
P16 | F | GCCGATCCAGGTCATGATGAT | |
R | GCATCTATGCGGGCATGGTTA | 300 | |
RASSF1A | F | TGGGGAGGTGAACTGGGAC | |
R | ACACGGCACGCACTTGG | 217 | |
ppENK | F | GCGGTTCCTGACACTTTGC | |
R | GGGTGCTGGTGCCATCTT | 245 | |
DNMT1 | F | GACCCATCTCTTGAAGGTGGTGTT | |
R | CCTCGTCATAACTCTCCACCTGCT | 164 | |
DNMT3a | F | AGGTGGACCGCTACATTGCC | |
R | GAGATGTCCCTCTTGTCACTAACG | 143 | |
P16 | MF | TTATTAGAGGGTGGGGCGGATCGC | |
MR | GACCCCGAACCGCGACCGTAA | 150 | |
UF | TTATTAGAGGGTGGGGTGGATTGT | ||
UR | CAACCCCAAACCACAACCATAA | 151 | |
RASSF1A | MF | GTGTTAACGCGTTGCGTATC | |
MR | AACCCCGCGAACTAAAAACGA | 93 | |
UF | TTTGGTTGGAGTGTGTTAATGTG | ||
UR | CAAACCCCACAAACTAAAAACAA | 105 | |
ppENK | MF | TGTGGGGAGTTATCGAGC | |
MR | GCCTTCGCGAAAAAAATCG | 96 | |
UF | TTGTGTGGGGAGTTATTGAGT | ||
UR | CACCTTCACAAAAAAAATCAATC | 100 | |
P16 | BS-F | TTGTTGTTTAGGTTGGAGTGTAGTG | |
BS-R | TCAAAAACATATATTAATAACAACCATCAA | 256 | |
ppENK | BS-F | AAAGAGTTTTTGGAAATAGGGGATA | |
BS-R | CATCAACAATTTCCCACTAAAAAAT | 241 | |
RASSF1A | BS-F | GTATGTAAGGGTTGGATGTGTAGAGA | |
BS-R | CCCCAAATAAAATCTCCACAAAAATC | 298 |
MSP, methylation-specific PCR; F, forward; R, reverse; M, methylated; U unmethylated; BS, bisulfite sequence.