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. 2015 Aug 18;8(8):994–1005. doi: 10.14202/vetworld.2015.994-1005

Supplement Table-2.

Summary statistics of within breed genetic diversity.

Locus Djakoré Gobra zebu


N Na Rs HO HE FIS PIC HS PHWE N Na Rs HO HE FIS PIC HS PHWE
BM1818 27 10 6.756 0.926 0.854 −0.086 0.818 0.853 NS 24 8 6.245 0.833 0.833 0 0.792 0.833 NS
BM2113 25 8 6.165 0.760 0.815 0.068 0.772 0.816 NS 24 8 6.653 0.542 0.858 0.373 0.820 0.865 S**
ETH10 25 8 6.254 0.840 0.829 −0.013 0.788 0.829 NS 22 7 5.450 0.591 0.773 0.239 0.721 0.777 NS
ETH152 26 8 6.077 0.885 0.835 −0.060 0.794 0.834 S*** 26 6 4.908 0.769 0.742 −0.037 0.689 0.742 NS
ETH225 28 6 4.780 0.643 0.722 0.111 0.669 0.724 NS 22 6 4.611 0.682 0.708 0.038 0.652 0.709 NS
HEL1 29 7 5.871 0.897 0.831 −0.080 0.791 0.829 NS 25 10 7.314 0.880 0.873 −0.008 0.839 0.873 NS
HEL9 30 11 7.182 0.800 0.871 0.082 0.840 0.872 NS 25 11 7.773 0.840 0.870 0.035 0.838 0.871 NS
INRA063 28 3 2.620 0.250 0.382 0.350 0.334 0.385 S* 19 5 4.330 0.474 0.700 0.329 0.634 0.706 NS
INRA037 23 6 4.237 0.783 0.694 −0.131 0.623 0.692 NS 17 7 5.719 0.706 0.802 0.123 0.748 0.805 NS
MM12 28 12 7.539 0.821 0.840 0.033 0.816 0.850 NS 22 10 6.781 0.773 0.796 0.029 0.754 0.797 NS
TGLA53 21 10 6.777 0.667 0.810 0.180 0.768 0.813 S* 17 10 7.396 0.824 0.836 0.015 0.792 0.836 NS
Mean 26.36 8.091 5.842 0.752 0.771 0.026 0.728 0.772 S** 22.09 8 6.107 0.719 0.799 0.102 0.752 0.801 S*

Locus Maure zebu N’Dama


N Na Rs HO HE PIC FIS HS PHWE N Na Rs HO HE PIC FIS HS PHWE

BM1818 22 7 5.894 0.864 0.831 0.785 −0.040 0.830 NS 16 8 5.968 0.875 0.821 0.765 −0.068 0.819 NS
BM2113 22 9 6.410 0.727 0.818 0.775 0.113 0.820 NS 14 6 5.434 0.643 0.815 0.753 0.217 0.821 NS
ETH10 26 7 5.311 0.654 0.784 0.734 0.168 0.786 NS 21 7 4.931 0.571 0.713 0.646 0.202 0.717 NS
ETH152 24 7 4.256 0.750 0.640 0.578 −0.176 0.638 NS 20 4 3.546 0.350 0.517 0.466 0.328 0.521 S*
ETH225 25 5 4.203 0.560 0.665 0.607 0.161 0.668 NS 14 7 5.783 0.714 0.783 0.722 0.090 0.786 NS
HEL1 28 7 6.075 0.643 0.842 0.804 0.240 0.846 S* 20 8 5.483 0.850 0.771 0.714 −0.106 0.768 NS
HEL9 26 9 7.062 0.883 0.867 0.833 −0.020 0.867 NS 21 8 6.422 0.667 0.867 0.765 0.177 0.811 NS
INRA063 22 4 3.682 0.591 0.580 0.523 −0.018 0.580 NS 23 5 3.657 0.522 0.655 0.576 0.207 0.658 NS
INRA037 21 7 5.684 0.762 0.811 0.761 0.061 0.812 NS 13 7 5.647 0.538 0.689 0.634 0.225 0.696 S*
MM12 23 10 5.960 0.870 0.744 0.694 −0.173 0.741 NS 17 4 3.694 0.588 0.626 0.554 0.061 0.627 NS
TGLA53 12 9 7.688 0.667 0.877 0.821 0.247 0.886 NS 8 6 6 0.750 0.833 0.748 0.106 0.839 NS
Mean 22.81 7.364 5.657 0.724 0.769 0.719 0.059 0.770 S* 17 6.364 5.142 0.642 0.735 0.667 0.123 0.733 S*

Number of individuals typed per locus (N); observed number of alleles per locus (Na); allelic richness per locus (Rs); observed (HO) and unbiased expected heterozygosity (HE); gene diversity of [20] (HS); amount of inbreeding within populations according to Weir and Cockerham, 1984 (FIS). PIC=Polymorphic information content; p values of test for HWE (PHWE); permutation tests (1000 replicates) of the inbreeding coefficient (FIS): Values in bold correspond to significant tests (percentage of replicates with a value of FIS less than that observed, i.e., >95%); NS: p>0.05=Not significant;

*

: p<0.05=Significant,

**

p<0.01=Very significant,

***

p<0.001=Highly significant