Table IV. Expression of genes involved in C4 photosynthesis and the Calvin-Benson cycle in GCs and M cells.
Data are presented as normalized counts, corrected log2 fold change, and the PPDE from EBSeq in G. gynandra (Gg) and T. hassleriana (Th).
| Gene | Arabidopsis Genome Initiative Identifier | Expression (Normalized Counts) |
Real Log2 (GC/M) |
PPDE |
|||||
|---|---|---|---|---|---|---|---|---|---|
| Gg GC | Gg M | Th GC | Th M | Gg | Th | Gg | Th | ||
| C4 cycle | |||||||||
| CA1 | AT3G01500 | 3,162 | 9,350 | 15,334 | 32,775 | −1.56 | −1.1 | 1.00 | 1.00 |
| CA4 | AT1G70410 | 161 | 8 | 550 | 451 | 3.71 | 0.28 | 1.00 | 0.03 |
| PPC2 | AT2G42600 | 4,750 | 22,625 | 1,347 | 1,907 | −2.25 | −0.5 | 1.00 | 0.18 |
| chlpMDH | AT5G56720 | 2 | 2 | 19 | 9 | 0.11 | 0.87 | 0.10 | 0.16 |
| mitoMDH | AT1G53240 | 1,017 | 2,574 | 519 | 570 | −1.34 | −0.13 | 1.00 | 0.06 |
| NADME1 | AT2G13560 | 5,062 | 15,948 | 145 | 29 | −1.65 | 2.17 | 1.00 | 0.51 |
| NADME2 | AT4G00570 | 2,714 | 6,383 | 201 | 179 | −1.23 | 0.17 | 1.00 | 0.04 |
| PEPCKin | AT1G08650 | 24 | 42 | 40 | 35 | −2.02 | 0 | 0.95 | 0.03 |
| BASS2 | AT2G26900 | 3,645 | 15,187 | 199 | 303 | −2.06 | −0.59 | 1.00 | 0.15 |
| ASP1 | AT2G30970 | 3,836 | 20,743 | 76 | 76 | −2.43 | 0 | 1.00 | 0.08 |
| ASP5 | AT4G31990 | 162 | 536 | 76 | 173 | −1.7 | −1.13 | 1.00 | 1.00 |
| ALAAT1 | AT1G17290 | 3,339 | 12,677 | 238 | 324 | −1.92 | −0.44 | 1.00 | 0.79 |
| PPDK | AT4G15530 | 14,837 | 71,729 | 33 | 22 | −2.27 | 0.52 | 1.00 | 0.17 |
| RP1 | AT4G21210 | 2 | 68 | 12 | 32 | −3.48 | −1.19 | 1.00 | 0.17 |
| PPA | AT5G09650 | 1,714 | 4,600 | 217 | 515 | −1.42 | −1.23 | 1.00 | 0.86 |
| UCP5 | AT2G22500 | 681 | 1,542 | 1 | 2 | −1.17 | −0.21 | 1.00 | 0.00 |
| AMK2 | AT5G47840 | 164 | 978 | 88 | 173 | −2.55 | −0.95 | 1.00 | 0.97 |
| ADK | AT5G35170 | 754 | 3,172 | 644 | 775 | −2.07 | −0.27 | 1.00 | 0.02 |
| Calvin-Benson cycle | |||||||||
| GAPA2 | AT1G12900 | 4,602 | 19,102 | 24,479 | 40,757 | −2.05 | −0.74 | 1.00 | 0.98 |
| TPI | AT2G21170 | 736 | 1,807 | 336 | 413 | −1.29 | −0.29 | 1.00 | 0.03 |
| GAPB | AT1G42970 | 5,314 | 23,668 | 6,449 | 9,920 | −2.15 | −0.62 | 1.00 | 0.02 |
| FBA2 | AT4G38970 | 5,469 | 16,023 | 10,679 | 16,998 | −1.55 | −0.67 | 1.00 | 0.01 |
| FBPP | AT3G54050 | 960 | 3,395 | 1,709 | 2,233 | −1.82 | −0.39 | 1.00 | 0.91 |
| RPI | AT3G04790 | 195 | 390 | 229 | 325 | −0.98 | −0.5 | 0.65 | 0.03 |
| PRK | AT1G32060 | 3,348 | 8,126 | 5,947 | 5,124 | −1.28 | 0.21 | 1.00 | 0.96 |
| RPE | AT5G61410 | 1,251 | 2,600 | 1,213 | 2,019 | −1.05 | −0.73 | 0.98 | 0.94 |
| TKS1 | AT3G60750 | 2,966 | 6,399 | 5,767 | 7,769 | −1.11 | −0.43 | 0.34 | 0.01 |
| ALD | AT4G26530 | 327 | 579 | 341 | 397 | −0.81 | −0.22 | 0.57 | 0.02 |
| RCA | AT2G39730 | 7,118 | 18,213 | 56,076 | 70,101 | −1.35 | −0.32 | 1.00 | 0.00 |
| RBCS1b | AT5g38430 | 32 | 43 | 118,165 | 162,707 | −0.36 | −0.46 | 0.28 | 0.00 |
| RBCS1a | AT1G67090 | 10,277 | 26,388 | 155,911 | 154,583 | −1.36 | 0.01 | 1.00 | 0.00 |