Figure 7.

Fold changes of RMR6-differentially expressed genes and their flanking RMR6-differentially sRNA loci. A, Percentages and tallies of up- and down-regulated genes by transcript type in rmr6-1 leaves. B, Scatterplots showing RMR6-related changes in sRNA accumulation at gene-flanking loci as a function of RMR6-related changes in transcript accumulation. Only genes that were differentially expressed in rmr6-1 leaves relative to wild type and that had a flanking RMR6-altered sRNA cluster are shown. Inf, infinity, genes that lacked any RNA-seq reads in wild type. For potting and regression purposes, these were assigned log₂ values of 10. -inf, genes that lacked any RNA-seq reads in rmr6-1. For potting and regression purposes, these were assigned log₂ values of -10. R² values for the indicated linear regressions are shown.