Table 2.
Satellite DNA molecules detected in whiteflies.
| Dataset | Genome a (Accession Number) | Best Match b (% Identity)/Accession Number | Satellite Size (nt) |
|---|---|---|---|
| Guat_T2 | VEM alphasatellite 1a (KT099170) | MeCMV-associated alphasatellite, Venezuela (76%)/KF670648 | 1370 |
| VEM alphasatellite 1b (KT099171) | MeCMV-associated alphasatellite, Venezuela (74%)/KF670648 | 1329 | |
| VEM alphasatellite 2 (KT099172) | Ageratum enation virus associated DNA 1, India (71%)/FN543100 | 1359 | |
| Israel_S | VEM Cotton leaf curl Gezira betasatellite * (KT099176) | Cotton leaf curl Gezira betasatellite, Egypt(95%)/AF397215 | 1324 |
| VEM Cotton leaf curl Gezira betasatellite * (KT099177) | Cotton leaf curl Gezira betasatellite, Egypt (99%)/AF397217 | 1348 | |
| VEM Cotton leaf curl Gezira betasatellite (KU095847) | Cotton leaf curl Gezira betasatellite, Egypt(98%)/AF397215 | 1310 | |
| VEM Cotton leaf curl Gezira virus alphasatellite * (KT099178) | Cotton leaf curl Gezira virus DNA 1, Burkina Faso (96%)/FN554581 | 1359 | |
| PR_T1 | VEM Ipomoea begomovirus satellite 1 (KT099179) | Ipomoea begomovirus satellite DNA beta isolate, Spain (70%)/FJ914403 | 731 |
| VEM Ipomoea begomovirus satellite 2 (KT099180) | Ipomoea begomovirus satellite DNA beta isolate, Spain (70%)/FJ914403 | 713 | |
| VEM Ipomoea begomovirus satellite 3 (KT099181) | SPLCLaV replication-associated protein, Spain (95%) **/EU839579 | 743 | |
| VEM alphasatellite 3a (KT099173) | Cuban alphasatellite 1, Cuba (86%)/HE806451 | 1300 | |
| PR_P | VEM alphasatellite 3b (KT099174) | Cuban alphasatellite 1, Cuba (85%)/HE806451 | 1307 |
| VEM alphasatellite 3c (KT099175) | Cuban alphasatellite 1, Cuba (86%)/HE806451 | 1303 | |
| PR_T1, T2, P, and E | VEM Ipomoea begomovirus satellite (Contigs, n = 49) * | Ipomoea begomovirus satellite DNA beta isolate, Spain (< 80%)/Various | |
| Spain T and S | VEM Ipomoea begomovirus satellite (Contigs, n = 10) * | Ipomoea begomovirus satellite DNA beta isolate, Spain (> 90%)/Various |
a Genomes that were not PCR-verified are highlighted with an asterisk (*). Genomes highlighted in grey summarize multiple Ipomoea satellites identified in datasets from Puerto Rico and Spain (Contig sequences representing complete Ipomoea satellites are provided in Supplemental File S1). b Genome-wide pairwise identities for best match in GenBank. Abbreviations refer to melon chlorotic mosaic virus (MeCMV) and sweet potato leaf curl Lanzarote virus (SPLCLaV). ** The best GenBank match to VEM Ipomoea begomovirus satellite 3 was a portion of the Rep-encoding region of the SPCLaV genome and the reported identity is only within this small region (8% coverage).