Table 2.
Variant calls for exomes aligned against rheMac2 and MacaM7 assemblies
| rheMac2 | rheMac2 | MacaM7 | MacaM7 | |
|---|---|---|---|---|
| Variant | Het | Hom | Het | Hom |
| Animal 17573 | ||||
| START_LOST | 34 | 4 | 8 | 0 |
| STOP_GAINED | 200 | 25 | 42 | 0 |
| STOP_LOST | 86 | 70 | 5 | 0 |
| FRAME_SHIFT | 394 | 669 | 100 | 4 |
| SPLICE_SITE_ACCEPTOR | 59 | 49 | 27 | 0 |
| SPLICE_SITE_DONOR | 70 | 38 | 28 | 3 |
| Animal ON12033 | ||||
| START_LOST | 36 | 19 | 13 | 4 |
| STOP_GAINED | 278 | 84 | 99 | 9 |
| STOP_LOST | 71 | 132 | 6 | 3 |
| FRAME_SHIFT | 618 | 722 | 232 | 29 |
| SPLICE_SITE_ACCEPTOR | 74 | 68 | 45 | 11 |
| SPLICE_SITE_DONOR | 91 | 71 | 50 | 13 |
| Animal ON22186 | ||||
| START_LOST | 29 | 20 | 9 | 4 |
| STOP_GAINED | 211 | 77 | 59 | 6 |
| STOP_LOST | 68 | 116 | 10 | 0 |
| FRAME_SHIFT | 484 | 778 | 188 | 24 |
| SPLICE_SITE_ACCEPTOR | 69 | 64 | 33 | 14 |
| SPLICE_SITE_DONOR | 73 | 60 | 34 | 13 |
| Animal 002 T-NHP | ||||
| START_LOST | 25 | 18 | 10 | 2 |
| STOP_GAINED | 222 | 67 | 86 | 5 |
| STOP_LOST | 55 | 112 | 10 | 1 |
| FRAME_SHIFT | 505 | 654 | 228 | 27 |
| SPLICE_SITE_ACCEPTOR | 77 | 57 | 52 | 6 |
| SPLICE_SITE_DONOR | 84 | 60 | 48 | 10 |