Table 1.

Previously Reported Evolutionary History of TEs and Its Reanalysis with VHICA.

Element	Type	Previous Results	Method	VHICA
P	DNA	HTT Dmel–Dwill1	Sequence similarity	HTT Dmel–Dwill
Paris1	DNA	No HTT2	dS	HTT signal
Paris2	DNA	2 Suspected HTT 2	dS	No HTTHTT signal
17.6	LTR	5 Suspected HTT 3	dS	No HTTHTT signal
BS	LINE	No HTT4	Phylogeny	HTT signal
Helena	LINE	No HTT 5	Phylogeny	HTT signal
I	LINE	No HTT6	Genome-wide dS	HTT signal in new species
1731	LTR	No HTT6	Genome-wide dS	HTT signal Dmel–Dsim
Chouto	LTR	No HTT6	Genome-wide dS	HTT signal Dmel–Dsimand new species
micropia	DNA	HTT Dmel–Dsim6	Genome-wide dS	HTT signal Dmel–Dsim
Bari1	DNA	HTT Dmel–Dyak6	Genome-wide dS	HTT signal Dmel–Dyakand new species
Dromar1	DNA	HTT Dsim–Dyak6	Genome-wide dS	HTT signal Dsim–Dyak
Dromar17	DNA	HTT in Dmoj	Amplification dynamic	HTT signal Dfic–Dsim
Dromar8	DNA	Suspected HTT7	Amplification dynamic	HTT signal
Dromar6	DNA	Suspected HTT7	Amplification dynamic	HTT signal

Sources: .—

¹Daniels et al. 1990

²Wallau, Lima, et al. 2011

³Vidal et al. 2009;

⁴Granzotto et al. 2011

⁵Granzotto et al. 2009

⁶Bartolome et al. 2009

⁷Wallau et al. 2014.