Table 3.
Epigenetic resource databases.
| DATABASE | WEBSITE | TISSUE DATA SET | SOURCE |
|---|---|---|---|
| Epigenome Browser | http://www.epigenomebrowser.org/ | Varied | ENCODE |
| Roadmap Epigenomics Visualization Hub (VizHub) | http://vizhub.wustl.edu/ | Stem cells & healthy primary tissues | NIH Roadmap Epigenomics Mapping Consortium |
| WashU EpiGenome Browser | http://epigenomegateway.wustl.edu/browser/ | Varied | Roadmap Epigenomics; ENCODE |
| NCBI | http://www.ncbi.nlm.nih.gov/epigenomics | Varied | Varied |
| Emsembl | http://useast.ensembl.org/info/website/tutorials/encode.html | Varied cell lines | Varied |
| MethylomeDB | http://www.neuroepigenomics.org/methylomedb/ | Human and mouse brain | Haghighi Lab |
| MethBase | http://smithlabresearch.org/software/methbase/ | Varied | Smith lab |
| NGSMethDB | http://bioinfo2.ugr.es:8080/NGSmethDB/ | Varied | Repository |
| DiseaseMeth | http://202.97.205.78/diseasemeth/ | Varied human disease | Varied |
| Gene Expression Omnibus (GEO) | http://www.ncbi.nlm.nih.gov/geo/roadmap/epigenomics/ | Varied tissues and cell lines | NIH Roadmap Epigenomics data |
| The Epigenome Atlas | http://www.genboree.org/epigenomeatlas/index.rhtml | Human reference epigenomes | NIH Roadmap Epigenomics Mapping Consortium |
| Canadian Epigenomics, Environment and Health Research Consortium Platform (CEEHRC) | http://epigenomes.ca/ | Varied | CEEHRC |
| Epigenie | http://epigenie.com/epigenetic-tools-and-databases/ | List of epigenetic resources | Varied |