Fig. 6.

Sample stochastic trajectories for one and three binding sites for RTC (a) and ATC (c), and their autocorrelation functions [(b) and (d)]. The variable parameter values (θ, δ_m, ρ_f, f) were fixed to (0.02 min⁻¹, 0.0159 min⁻¹, 0.8928 min⁻¹, 3.63) for the RTC and (0.02 min⁻¹, 0.0186 min⁻¹, 0.1781 min⁻¹, 30) for the ATC. We chose parameters that produced oscillation over the largest range of DNA unbinding rates. The rest of the parameters are given in Table I.