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. 2016 Mar 4;7:269. doi: 10.3389/fmicb.2016.00269

Figure 4.

Figure 4

Phylogenetic analysis. Maximum likelihood phylogenetic analysis of (A) full-length VP1 protein and (B) a shorter region comprising only the VP1R4 HMM region. Sequences were translated from the contigs reconstructed by GenSeed-HMM using the VP1R4 seed. Different subfamilies of the Microviridae family are depicted in distinct colors, references were obtained from Roux et al. (2012). Branches represented by sequences derived in this work are labeled in black. Asterisks in the nodes indicate bootstrap values higher than 70%. Numbers represent contig numbers as observed in Figure 5.