Table 2.
Responsive genes up-regulated in the ask1 mutant transcriptome
| Gene ID | Gene name/description | Signaling pathways/responses |
| AT5G54490 | PINOID-BINDING PROTEIN 1 (PBP1) | Auxin |
| AT3G09870 | SAUR-like auxin-responsive protein | Auxin |
| AT5G61600 | ETHYLENE RESPONSE FACTOR 104 (ERF104) | Ethylene |
| AT4G34410 | REDOX RESPONSIVE TRANSCRIPTION FACTOR 1 | Ethylene |
| AT1G19180 | JASMONATE-ZIM-DOMAIN PROTEIN 1 (JAZ1) | Jasmonic acid |
| AT1G17380 | JASMONATE-ZIM-DOMAIN PROTEIN 5 (JAZ5) | Jasmonic acid |
| AT3G11480 | SABATH methyltransferase | Jasmonic acid, fungus, wounding |
| AT4G27280 | Calcium-binding EF-hand family protein | Karrikin |
| AT3G02380 | CONSTANS-LIKE 2 (COL2) | Light |
| AT3G22840 | EARLY LIGHT-INDUCABLE PROTEIN1 (ELIP1) | Light |
| AT4G14690 | EARLY LIGHT-INDUCIBLE PROTEIN 2 (ELIP2) | Light |
| AT3G17609 | HY5-HOMOLOG (HYH) | Light |
| AT3G59060 | PHYTOCHROME INTERACTING FACTOR 3-LIKE 6 | Light |
| AT5G59820 | RESPONSIVE TO HIGH LIGHT 41 (RHL41) | Light |
| AT2G30520 | ROOT PHOTOTROPISM 2 (RPT2) | Light |
| AT2G46830 | CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) | Circadian |
| AT1G01060 | LATE ELONGATED HYPOCOTYL (LHY) | Circadian |
| AT3G09600 | REVEILLE 8 (RVE8) | Circadian |
| AT3G12580 | HEAT SHOCK PROTEIN 70 (HSP70) | Heat |
| AT5G51440 | HSP20-like | Heat |
| AT2G31380 | SALT TOLERANCE HOMOLOGUE (STH) | Salt |
| AT1G27730 | SALT TOLERANCE ZINC FINGER (STZ) | Salt |
| AT3G55980 | SALT-INDUCIBLE ZINC FINGER 1 (SZF1) | Salt |
| AT2G33380 | RESPONSIVE TO DESICCATION 20 (RD20) | Desiccation |
| AT5G24660 | RESPONSE TO LOW SULFUR 2 (LSU2) | Sulfur deficiency |
| AT1G19640 | JASMONIC ACID CARBOXYL METHYLTRANSFERASE | Wounding, and methyljasmonate |
| AT5G64510 | TUNICAMYCIN INDUCED 1 (TIN1) | ER-stress, heat, light, hydrogen peroxide |
| AT5G57560 | TOUCH 4 (TCH4) | Mechanical stimulus |
| AT1G12110 | NITRATE TRANSPORTER 1.1 (NRT1.1) | Nitrate, water deprivation |
| AT1G61800 | GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2 (GPT2) | Glucose, sucrose, karrikin, nematode |
| AT2G46400 | WRKY DNA-BINDING PROTEIN 46 | Chitin |
| AT5G51190 | Ethylene response factor | Chitin, wounding |
| AT3G61190 | BON ASSOCIATION PROTEIN 1 (BAP1) | Chitin, cold, fungus, heat, jasmonic acid, salicylic acid, wounding |
| AT4G11280 | ACC SYNTHASE 6 (ACS6) | ABA, auxin, chitin, ethylene, jasmonic acid, oxidative stress, wounding |
| AT5G59310 | LIPID TRANSFER PROTEIN 4 (LTP4) | ABA, cold, salt, water deprivation |
| AT4G25100 | FE SUPEROXIDE DISMUTASE 1 (FSD1) | Cadmium ion, copper ion, oxidative stress |
| AT1G02930 | GLUTATHIONE S-TRANSFERASE 6 | Cadmium ion, oxidative stress, salt, water deprivation |
| AT3G21890 | B-box type zinc finger protein | UV-B, sucrose |
| AT2G37040 | PHE AMMONIA LYASE 1 (PAL1) | UV-B, karrikin, oxidative stress, wounding |