Table 3.
Top five enriched cis-elements in the putative promoter regions of down-/up-regulated genes in the ask1 transcriptome
| Oligomer | # in query | # in genomic set | # of promoters in query with oligomer | # of promoters in genomic set with oligoMer | Binomial distribution p-value |
|---|---|---|---|---|---|
| 500 bp promoters of down-regulated genes in ask1 | |||||
| CACGTG | 30 | 7766 | 12/42 | 3253/33602 | 3.53E-04 |
| ACACGT | 23 | 7390 | 17/42 | 5609/33602 | 1.61E-04 |
| CGCAAA | 13 | 4569 | 13/42 | 3995/33602 | 6.16E-04 |
| GCCACG | 11 | 2914 | 10/42 | 2594/33602 | 8.46E-04 |
| GATAAG | 27 | 9179 | 19/42 | 7797/33602 | 9.09E-04 |
| 1000 bp promoters of down-regulated genes in ask1 | |||||
| CACGTG | 42 | 12404 | 16/42 | 5033/33602 | 1.57E-04 |
| AACTGT | 33 | 17175 | 28/42 | 13171/33602 | 2.04E-04 |
| GATAAG | 41 | 18464 | 28/42 | 13811/33602 | 4.93E-04 |
| ATTATG | 60 | 33774 | 35/42 | 20241/33602 | 8.37E-04 |
| CGTGTA | 22 | 7824 | 17/42 | 6717/33602 | 1.25E-03 |
| 500 bp promoters of up-regulated genes in ask1 | |||||
| CACGTG | 72 | 7766 | 24/74 | 3253/33602 | 4.95E-08 |
| ACACGT | 57 | 7390 | 30/74 | 5609/33602 | 7.19E-07 |
| ACGTGG | 30 | 5475 | 22/74 | 4404/33602 | 9.42E-05 |
| AAGTGG | 31 | 7504 | 27/74 | 6502/33602 | 2.63E-04 |
| ACACTC | 23 | 5788 | 23/74 | 5177/33602 | 3.37E-04 |
| 1000 bp promoters of up-regulated genes in ask1 | |||||
| CACGTG | 100 | 12404 | 30/74 | 5033/33602 | 6.83E-08 |
| ACACGT | 77 | 12599 | 38/74 | 9080/33602 | 5.14E-06 |
| ACGTGG | 46 | 9196 | 31/74 | 7047/33602 | 2.50E-05 |
| ATATTA | 177 | 65927 | 68/74 | 25116/33602 | 1.22E-04 |
| TGAGAC | 48 | 12304 | 36/74 | 10027/33602 | 2.98E-04 |