Table 2. Marker loci associated with traits and their explained phenotypic variation in cotton cultivars.
| Locus | Position(cM) | Traits related to salt tolerance* | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| RCC | RPH | RRDM | RSDM | RSOD | RPOD | RCAT | RMDA | RGR | RGP | ||
| NAU2437 | A1(13.28) | 6.81 | 8.72 | 8.45 | 9.14 | ||||||
| NAU7049 | A1(33.484) | 3.88 | |||||||||
| NAU2419 | A1(89.554) | 4.84 | |||||||||
| BNL3424 | A2(107.067) | 2.75 | |||||||||
| NAU2161 | A3(6.031) | 7.06 | |||||||||
| NAU483 | A3(28.185) | 3.81 | |||||||||
| NAU7182 | A4(20.606) | 2.67 | 5.04 | 3.64 | |||||||
| NAU3592 | A4(115.829) | 6.3 | 8.52 | 4.18 | |||||||
| NAU934 | A5(19.745) | 4.26 | |||||||||
| NAU2561 | A5(55.633) | 2.62 | |||||||||
| BNL3452 | A5(183.628) | 13.7 | |||||||||
| NAU2679 | A6(58.824) | 11.85 | |||||||||
| NAU2995 | A7(52.324) | 2.51 | |||||||||
| BNL3792 | A8(47.75) | 2.8M | |||||||||
| Gh486 | A9(10.75) | 3.74M | |||||||||
| BNL1414 | A9(95.796) | 3.31 | 5.74 | 5.38 | |||||||
| NAU462 | A9(112.13) | 5.04 | |||||||||
| NAU2508 | A10(0.51) | 3.75 | 3.49 | ||||||||
| NAU4921 | A10(12.65) | 2.42G | 2.56 | ||||||||
| NAU5166 | A10(98.924) | 3.76 | |||||||||
| NAU5192 | A11(3.272) | 6.64 | |||||||||
| BNL1231 | A11(162.784) | 2.18 | |||||||||
| NAU1151 | A12(98.908) | 5.78 | |||||||||
| NAU3398 | A13(52.406) | 4.92 | 3.75M | ||||||||
| NAU2300 | A13(97.812) | 2.07 | 2.12 | 2.48 | |||||||
| JESPR204 | A13(105.781) | 5.53 | 5.56 | ||||||||
| JESPR152 | D1(17.336) | 3.9 | 3.2M | 6.63 | |||||||
| NAU2901 | D1(23.449) | 3.17 | |||||||||
| TME03 | D1(77.181) | 2.86 | |||||||||
| NAU458 | D1(124.81) | 4.03 | |||||||||
| CIR246 | D2(0) | 4.42 | |||||||||
| NAU2173 | D2(63.802) | 5.38 | |||||||||
| NAU5027 | D2(72.797) | 4.79 | |||||||||
| NAU2190 | D2(93.309) | 3.59 | |||||||||
| NAU7024 | D3(58.626) | 4.93 | 6.13 | ||||||||
| NAU3639 | D3(68.254) | 2.44 | |||||||||
| NAU1042 | D5(121.466) | 3.73 | |||||||||
| BNL3594 | D6(10.127) | 8.04 | |||||||||
| NAU7209 | D6(101.047) | 4.11 | |||||||||
| BNL3436 | D6(114.173) | 4.65 | 3.33 | 3.77 | |||||||
| NAU2714 | D6(121.89) | 3.69 | 2.48 | ||||||||
| BNL3359 | D6(142.146) | 2.43 | 2.59 | 2.5 | |||||||
| NAU3911 | D7(31.898) | 2.57 | 2.38 | 2.63 | 2.45 | ||||||
| BNL1694 | D7(55.78) | 4.63 | 5.24 | 7.42 | |||||||
| NAU6752 | D7(75.348) | 4.66 | |||||||||
| NAU3053 | D7(99.873) | 3.27 | |||||||||
| NAU493 | D7(115.416) | 2.59 | |||||||||
| NAU1350 | D8(59.972) | 2.33 | 2.74 | ||||||||
| NAU1369 | D8(108.998) | 3.63G | |||||||||
| NAU3986 | D9(57.431) | 4.26 | |||||||||
| JESPR208 | D9(116.611) | 4.8 | 5.61 | 6.31 | |||||||
| NAU5189 | D9(137.181) | 2.77M | 6.04 | 3.35M | |||||||
| NAU6755 | D10(92.245) | 2.68 | |||||||||
| BNL1404 | D11(43.704) | 4.79 | |||||||||
| Gh508 | D11(55.82) | 2.8 | |||||||||
| NAU5418 | D11(77.269) | 5.91 | |||||||||
| NAU429 | D11(162.789) | 7.13 | |||||||||
| NAU3862 | D12(30.497) | 2.69 | |||||||||
| BNL3537 | D12(93.32) | 3.71 | 5.35 | 5.01 | |||||||
| NAU2697 | D13(34.095) | 6.04 | |||||||||
*Abbrevation for 10 traits related to salt tolerance is relative chlorophyll content (RCC), relative plant height (RPH), relative root dry matter (RRDM), relative shoot dry matter (RSDM), relative SOD activity (RSOD), relative POD activity (RPOD), relative CAT activity (RCAT) and relative MDA content (RMDA), relative germination rate (RGR), relative germination percentage (RGP), respectively. P<0.05 is indicated in general case; P<0.01 is indicated in boldface; G means significance detected only in general linear model (GLM) test; M means significance detected only in mixed linear model (MLM) test; No marked values means detected both by MLM and GLM tests.