Table 4.
Summary of sequence conservation between Fom-5190a and Foc-38-1 predicted dispensable scaffolds and other Fusarium species
| Foc-38-1 | (Masked)a | Fom-5190a | (Masked)a | Fop-37622 | (Masked)a | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total length of predicted dispensable scaffolds (bp) | 13,294,565 | (12,714,301) | 8,766,042 | (8,531,553) | 11,600,480 | (8,427,945) | ||||||
| Foc length conserved | Foc sequence conserved | Foc length conserved maskeda | Foc sequence conserved masked | Fom length conserved | Fom sequence conserved | Fom length conserved masked | Fom sequence conserved masked | Fop length conserved | Fop sequence conserved | Fop length conserved masked | Fop sequence conserved masked | |
| (bp) | (%) | (bp) | (%) | (bp) | (%) | (bp) | (%) | (bp) | (%) | (bp) | (%) | |
| Foc-38-1 | - | - | - | - | 3,504,836 | 40 | 3,051,034 | 34.8 | 5,820,869 | 50.2 | 3,747,704 | 32.3 |
| Fom-5190a | 3,618,892 | 27.2 | 3,134,089 | 23.6 | - | - | - | - | 5,200,782 | 44.8 | 3,852,673 | 33.2 |
| Fop-37622 | 5,645,201 | 42.5 | 4,105,088 | 30.9 | 4,413,435 | 50.3 | 3,484,062 | 39.7 | - | - | - | - |
| F. solani | 1,417,711 | 10.7 | 1,099,653 | 8.3 | 1,215,395 | 13.9 | 1,037,655 | 11.8 | 1,458,181 | 12.6 | 954,748 | 8.2 |
| F. oxysporum f. sp. lycopersici | 4,580,988 | 34.5 | 2,041,608 | 15.4 | 3,174,649 | 36.2 | 1,543,921 | 17.6 | 5,107,489 | 44.0 | 1,636,670 | 14.1 |
| F. oxysporum f. sp. melonis | 5,635,252 | 42.4 | 4,242,674 | 31.9 | 4,684,280 | 53.4 | 3,907,121 | 44.6 | 6,686,394 | 57.6 | 3,999,585 | 34.5 |
| Fo5176 | 6,429,341 | 48.4 | 4,618,139 | 34.7 | 5,013,128 | 57.2 | 3,930,676 | 44.8 | 7,604,002 | 65.5 | 4,446,346 | 38.3 |
aMasked sequences exclude repetitive regions