Table 6.
F. oxysporum f. sp. lycopersici | F. oxysprum f. sp. medicaginis Fom-5190a | F. oxysporum f. sp. ciceris 38-1 | F. oxysporum f. sp. pisi 37622b | F. oxysporum f. sp. brassica Fo5176 | F. oxysporum f. sp. cubense II5 | F. oxysporum f. sp. melonis 26406_1 | F. solani (N. haematococca) | F. virguliforme Mont-1 | F. graminearum 1-4 | F. verticillioides | F. fujikuroi IMI 58289 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
six1 | 14 (2nd half dup. on chr 14) | split over 696 and 1167 (partial dup. 241) | - | 1.281, 1.315 | contig00620 | 1.92, 1.101 | 1.500 | - | - | - | - | - |
six2 | 14 | - | - | - | - | 1.95 | - | - | - | - | 5 | 06 |
six3 | 14 | - | - | - | - | - | - | - | - | - | - | - |
six4 | - | - | - | - | contig01435 | 1.102 | - | - | - | - | - | - |
six4b | _ | - | - | - | contig04359 | _ | - | - | - | - | - | - |
six5 | 14 (partial match Chr 5) | - | 1215 | partial match 1.4 | - | - | 1.4 | - | - | - | - | - |
six6 | 14 | - | - | - | - | 1.102 | 1.226 | - | - | - | - | - |
six7 | 14 | - | - | - | - | - | - | - | - | - | - | - |
six8 | 2, 3 (3 copies), 6 (2 copies), 7, 14 (2 copies) | 420 | 0138 | - | contig03501 | 1.127 | - | - | - | - | - | - |
six9 | 14 | 270 | - | 1.43 | contig02779 | 1.86, 1.70 | - | - | - | - | - | - |
six10 | 14 | - | - | - | - | - | - | - | - | - | - | - |
six11 | 14 | - | 1126 | - | - | - | 1.532 | - | - | - | - | - |
six12 | 14 | - | - | - | - | - | - | - | - | - | - | - |
six13 | 6 (2 copies) | 306 (split), 3812, 306 | 1143 | 1.90 | - | 1.216 | 1.222 | - | - | - | - | - |
six14 | 14 (1st half dup.) | - | 0905 | 1.191 | - | - | - | - | - | - | 2 | - |
aID of scaffold or contig showing TBLASTN matches with an Expect (E) value score below 10−5, dup duplicate. b Fop-37622 contained annotated homologs of SIX1 (FOVG_19815, FOVG_19730 and SIX9 (FOVG_17008) and matches by TBLASTN to unannotated versions of SIX13 and SIX14 which were manually annotated for this study (Additional file 23) and SIX5 where the coding sequence was interrupted by stop codons