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. 2016 Mar 7;7:251. doi: 10.3389/fpls.2016.00251

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Copyright © 2016 Bozsó, Ott, Kámán-Tóth, Bognár, Pogány and Szatmári.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Number and direction of expression changes induced by different bacterial treatments. (A–C) Number of common and specific genes significantly up- or down-regulated after inoculations. Area-proportional Venn diagrams were produced with help of BioVenn (Hulsen et al., 2008) (D) Cluster analysis of transcriptomic alterations induced by different bacterial treatments. Genes appearing in cluster 1 are affected mostly by PTI and ETI at 6 hpi. Some of the genes here are up- or down regulated exclusively during PTI at 6 hpi. Cluster 2 contains genes that are specific mainly to ETI at 6 hpi. Group 3 includes specific genes of late (48 hpi) PTI. Most of the genes belonging to cluster 4 were activated in all samples irrespective of the type of bacterial treatment. Cluster 5 represents genes that changed their transcription at 6 hpi regardless of the type of the treatment. Group 6 contains activated or repressed genes induced by living pathogens with functional Type III secretion system (either ETI inducible P. syringae or compatible P. tabaci). In cluster 7 there are genes whose transcription was specifically modulated by compatible disease causing P. tabaci. Genes belonging to cluster 8 were repressed in all samples irrespective of the type of bacterial treatment. Red and green colors represent up- or down regulation of genes compared to water infiltrated control, respectively.