Table 10.
Gene enrichment results of down-regulated genes that were specifically repressed by compatible P. tabaci at 6 hpi (but remained unaffected in PTI or ETI).
| GO_acc | Term | Number of genesa | FDRb |
|---|---|---|---|
| BIOLOGICAL PROCESSES (34 GENES) | |||
| GO:0000165 | MAPKKK cascadec | 6 | 3.50E-05 |
| GO:0016117 | Carotenoid biosynthetic process | 5 | 3.50E-05 |
| GO:0010114 | Response to red light | 5 | 3.50E-05 |
| GO:0015995 | Chlorophyll biosynthetic process | 5 | 5.30E-05 |
| GO:0009862 | Systemic acquired resistance, salicylic acid mediated signaling pathway | 6 | 5.90E-05 |
| GO:0031348 | Negative regulation of defense response | 6 | 7.80E-05 |
| GO:0009867 | Jasmonic acid mediated signaling pathway | 6 | 7.80E-05 |
| GO:0010103 | Stomatal complex morphogenesis | 5 | 7.80E-05 |
| GO:0006364 | rRNA processing | 6 | 0.00013 |
| GO:0010207 | Photosystem II assembly | 5 | 0.00013 |
| GO:0010310 | Regulation of hydrogen peroxide metabolic process | 5 | 0.00014 |
| GO:0050832 | Defense response to fungus | 6 | 0.00014 |
| GO:0010027 | Thylakoid membrane organization | 5 | 0.00015 |
| GO:0010363 | Regulation of plant-type hypersensitive response | 6 | 0.00019 |
| GO:0032268 | Regulation of cellular protein metabolic process | 5 | 0.00021 |
| GO:0006612 | Protein targeting to membrane | 6 | 0.00022 |
| GO:0009409 | Response to cold | 7 | 0.00022 |
| GO:0019288 | Isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | 5 | 0.00022 |
| GO:0010200 | Response to chitin | 6 | 0.00023 |
| GO:0009627 | Systemic acquired resistance | 6 | 0.00031 |
| GO:0042742 | Defense response to bacterium | 5 | 0.0016 |
| GO:0044275 | Cellular carbohydrate catabolic process | 5 | 0.0052 |
| GO:0018193 | Peptidyl-amino acid modification | 5 | 0.0079 |
| GO:0009117 | Nucleotide metabolic process | 5 | 0.012 |
| GO:0071554 | Cell wall organization or biogenesis | 5 | 0.044 |
| CELLULAR COMPONENTd (34 GENES) | |||
| GO:0009535 | Chloroplast thylakoid membrane | 9 | 3.20E-09 |
| GO:0009570 | Chloroplast stroma | 8 | 6.60E-06 |
| GO:0048046 | Apoplast | 6 | 9.60E-05 |
| GO:0005618 | Cell wall | 6 | 0.00082 |
| GO:0005840 | Ribosome | 5 | 0.0024 |
| GO:0009941 | Chloroplast envelope | 5 | 0.0042 |
a
Number of genes associated with the GO term.
b
FDR<0.05 were selected as significant enrichment.
c
GO terms highlighted with gray background were terms that were over-represented in ETI at 6 hpi (up-regulated ETI specific genes in Table 2).
d
Possible localization of the gene product(s).