Table 2.

Above the diagonal: Fst values from Porlier et al. (2012b, data averaged across several years), n = 247 Individuals, 6–10 microsatellite markers. Below the diagonal: Fst values for SNPs retained after filtering with 5% MAF and a 95% call rate. n = 197 individuals, 3159 SNPs (Szulkin et al, in press). Empirical P‐values in brackets were computed using 500 permutations (lowest P‐values are therefore bounded by 0.002)

	D‐Rouvière	D‐Muro	E‐Muro	E‐Pirio
D‐Rouvière	–	0.049	0.042	0.041
D‐Muro	0.0541 (P ≤ 0.002**)	–	0.007	0.004
E‐Muro	0.0335 (P ≤ 0.002**)	0.0156 (P = 0.004**)	–	0.005
E‐Pirio	0.0520 (P ≤ 0.002**)	0.0099 (P = 0.347)	0.0102 (P = 0.403)	–