Table S2.
Full list of HCV-associated cellular proteins identified by MS
| No. | Identifier | Gene name | Protein name | Log(e) | No. of MS/MS spectra | Molecular mass, kDa | Gel slice |
| 1 | ENSP00000351416 | ANKRD17 | Ankyrin repeat domain 17 | −54.9 | 9 | 274.1 | A |
| 2 | ENSP00000448366 | SCYL2 | SCY1-like 2 | −18.1 | 3 | 77 | A |
| 3 | ENSP00000392423 | RELN | Reelin | −7.9 | 3 | 388.1 | A |
| 4 | ENSP00000451870 | TRAJ56 | T-cell receptor alpha joining 56 | −2.5 | 2 | 2.2 | A |
| 5 | ENSP00000376899 | PTGFRN | Prostaglandin F2 receptor inhibitor | −54.3 | 12 | 98.5 | B |
| 6 | ENSP00000295598 | ATP1A1 | ATPase, Na+/K+ transporting, alpha-1 polypeptide | −27.4 | 5 | 112.8 | B |
| 7 | ENSP00000316032 | NUP98 | Nucleoporin 98kDa | −17.3 | 6 | 195.7 | B |
| 8 | ENSP00000438588 | MTHFD1 | Methylenetetrahydrofolate dehydrogenase (NADP+-dependent) 1 | −13.5 | 4 | 110.5 | B |
| 9 | ENSP00000261973 | RBM25 | RNA binding motif protein 25 | −10.2 | 3 | 100.1 | B |
| 10 | ENSP00000421907 | ADD1 | Adducin 1 (alpha) | −8.2 | 3 | 70 | B |
| 11 | ENSP00000415559 | EGFR | Epidermal growth factor receptor | −6.1 | 3 | 120.6 | B |
| 12 | ENSP00000367122 | SLC3A2 | Solute carrier family 3, member 2 | −23.8 | 4 | 68 | C |
| 13 | ENSP00000264883 | NUP54 | Nucleoporin 54kDa | −14.3 | 6 | 55.4 | C |
| 14 | ENSP00000316664 | IGSF8 | Ig superfamily, member 8 | −8.5 | 2 | 65 | C |
| 15 | ENSP00000441751 | JUP | Junction plakoglobin | −8.3 | 5 | 66.3 | C |
| 16 | ENSP00000388491 | CNOT4 | CCR4-NOT transcription complex, subunit 4 | −8.2 | 2 | 77.8 | C |
| 17 | ENSP00000387282 | AGFG1 | ArfGAP with FG repeats 1 | −7.7 | 3 | 60.7 | C |
| 18 | ENSP00000321347 | STRBP | Spermatid perinuclear RNA binding protein | −4.9 | 2 | 73.6 | C |
| 19 | ENSP00000355890 | EPRS | Glutamyl-prolyl-tRNA synthetase | −4 | 2 | 170.5 | C |
| 20 | ENSP00000368884 | RPS6KA3 | Ribosomal protein S6 kinase alpha-3 | −3.1 | 3 | 83.7 | C |
| 21 | ENSP00000424874 | PGM3 | Phosphoglucomutase-3 | −2.6 | 2 | 59.8 | C |
| 22 | ENSP00000233078 | DAZAP1 | DAZ-associated protein 1 | −8.2 | 2 | 43.4 | D/F |
| 23 | ENSP00000286713 | STOM | Stomatin | −28 | 3 | 31.7 | E |
| 24 | ENSP00000260130 | SDCBP | Syndecan binding protein (syntenin) | −10.7 | 3 | 32.4 | E |
| 25 | ENSP00000221566 | SGTA | Small glutamine-rich tetratricopeptide repeat-containing, alpha | −10.3 | 3 | 34 | E |
| 26 | ENSP00000300161 | YWHAB | Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta-polypeptide | −6.7 | 2 | 28.1 | E |
| 27 | ENSP00000383981 | RPS27A | Ribosomal protein S27a | −4.4 | 4 | 18 | E |
| 28 | ENSP00000342026 | PRDX6 | Peroxiredoxin 6 | −3.9 | 2 | 25 | E |
| 29 | ENSP00000447938 | CD63 | CD63 molecule | −3.9 | 2 | 16 | E |
| 30 | ENSP00000227525 | TMEM109 | Transmembrane protein 109 | −35.2 | 15 | 26.2 | G |
| 31 | ENSP00000278222 | SAA4 | Serum amyloid A4, constitutive | −12.8 | 3 | 14.7 | G |
| 32 | ENSP00000340761 | BRI3BP | BRI3 binding protein | −11.9 | 3 | 27.8 | G |
| 33 | ENSP00000307705 | HIST1H1E | Histone cluster 1, H1e | −11 | 2 | 21.9 | G |
| 34 | ENSP00000295522 | CLDN1 | Claudin 1 | −10.1 | 3 | 22.7 | G |
| 35 | ENSP00000263645 | CD81 | CD81 molecule | −9.8 | 2 | 25.8 | G |
| 36 | ENSP00000435096 | RPS25 | Ribosomal protein S25 | −9.3 | 3 | 13.7 | G |
| 37 | ENSP00000236671 | CTSD | Cathepsin D | −8.7 | 2 | 44.5 | G |
| 38 | ENSP00000322419 | RPLP2 | Ribosomal protein, large, P2 | −7.6 | 3 | 11.7 | G |
| 39 | ENSP00000400591 | SNRPE | Small nuclear ribonucleoprotein polypeptide E | −7.3 | 2 | 10.8 | G |
| 40 | ENSP00000257013 | FAM127A | Family with sequence similarity 127, member A | −7.2 | 3 | 13.2 | G |
| 41 | ENSP00000360399 | TMEM59 | Transmembrane protein 59 | −6.9 | 2 | 21.8 | G |
| 42 | ENSP00000325376 | HNRNPM | Heterogeneous nuclear ribonucleoprotein M | −6.8 | 2 | 77.5 | G |
| 43 | ENSP00000233596 | REEP6 | Receptor accessory protein 6 | −6.4 | 2 | 20.7 | G |
| 44 | ENSP00000309757 | LPL | Lipoprotein lipase | −5.6 | 2 | 53.1 | G |
| 45 | ENSP00000358089 | TIAL1 | TIA1 cytotoxic granule-associated RNA binding protein-like 1 | −4.8 | 2 | 43.4 | G |
| 46 | ENSP00000261811 | CYSTM1 | Cys-rich transmembrane module containing 1 | −4.8 | 2 | 10.6 | G |
ArfGAP, GTP-ase activating protein for ADP-ribosylation factors; BRI3, brain protein I3; CCR4-NOT, chemokine (C-C motif) receptor 4; DAZ, deleted in azoospermia; FG, phe-gly; TIA1, T-cell restricted intracellular antigen-1. In bold, candidate hits selected for follow-up studies.