Table 1.

Citrus EST catalogs and its application in Japan

Library					NO of EST analyzed	ESTs-gene homologs used for functional analysis (example)	Reference	No of frame loci (AGI map)a
Name	Source cultivar	Latin name	Tissue (organ)	Stage
VSS	Valencia orange	C. sinensis (L.) Osbeck	Young seed	1 month after anthesis	577	CuMFT1 promoter, etc.	Hisada et al. 1996	17
FRI	Miyagawa wase	C. unshiu Marc.	Fruit pulp	Fruit developing	1,051		Hisada et al. 1997	11
FRM	Miyagawa wase	C. unshiu Marc.	Fruit pulp	Maturation	385	CiFT, CitMT45 promoter, CitPAP, CitCHS, etc.	Moriguchi et al. 1998a, 1998b	21
ALM	Miyagawa wase	C. unshiu Marc.	Albedo	Maturation	623	CitLGT, etc.	Kita et al. 2000	57
OVA	Miyagawa wase	C. unshiu Marc.	Ovary	Flowering	827	CitSERK, CitMADS, CuSEP, CuSEP, CuFUL	Shimada et al. 2003	34
ALP	Miyagawa wase	C. unshiu Marc.	Alvedo	Initiation stage of rind peeling	941		Fujii et al. 2003a	26
WFY	Miyagawa wase	C. unshiu Marc.	Whole fruit	Young (1 month after flowering)	1,689		Direct submission on DDBJ	40
BFC	Miyagawa wase	C. unshiu Marc.	Fuit rind	Rind coloring	1,650	CuMTSE2 promoter, monoterpene synthases, etc.	Nishikawa et al. 2009b, Shimada et al. 2004, etc.	54
FBI	Miyagawa wase	C. unshiu Marc.	Flower bud	1 month prior to anthesis	2,367			57
GSA	Miyagawa wase	C. unshiu Marc.	Seed	4 days after imbibition	1,920			1
RGP	Miyagawa wase	C. unshiu Marc.	Root	2 week seedling	960
SLG	Miyagawa wase	C. unshiu Marc.	Shoot	2 week seedling	1,920
YJS	Miyagawa wase	C. unshiu Marc.	Juice sac	60 days after flowering	1,926			2
PCC	Miyagawa wase	C. unshiu Marc.	Callus	Culture for proliferation	960			1
EIC	Miyagawa wase	C. unshiu Marc.	Callus	Culture for embryogenesis	1,152
STG	Miyagawa wase	C. unshiu Marc.	Stigma	Flowering	3,552			21
ANT	Miyagawa wase	C. unshiu Marc.	Anther	Flowering	2,600			6
LLL	Lisbon lemon	C. limon (L.) Burm. f.	Leaf	Young (before full expansion)	2,016			10
EGJ	Kinokuni	C. kinokuni hort. ex Tanaka	Ovule	60–70 days after flowering	2,112			14
Total					29,228			372

^aRefer to Shimada et al. (2014a).