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. 2016 Jan 14;(107):53422. doi: 10.3791/53422
Step 1 – Adjust the input 
Adjusted input = Raw Ct(input) - Log2(fraction of total chromatin)
Raw Ct input from total chromatin Log210
Input 29.5 10% 3.32
Adjusted input = 29.5 – 3.32 = 26.18 
Step 2 - % of input calculations
Sample Raw Ct Ct(adjusted input) –Ct(sample) 2 Ct(adjusted input) –Ct(sample) *100%
Input 26.18
ChIP-Ab 31.45 -5.27 2.59
No-Ab 34.5 -8.32 0.31