Table 2.
Comparison of models before and after running FG-MD. Data are from the first model submitted by Zhang-Server on the 58 single-domain proteins.
| Parameters | Model before FG-MD | Model after FG-MD | P-value | |
|---|---|---|---|---|
|
| ||||
| Comparison to the native structure | RMSD (Å) | 7.132 | 7.103 | 0.10 |
| TM-score | 0.664 | 0.665 | 0.40 | |
| GDT-HA | 0.430 | 0.431 | 0.08 | |
| GDC-SC | 0.243 | 0.249 | 0.02 | |
| HB-score | 0.443 | 0.519 | 1.01e-12 | |
|
| ||||
| Physical quality assessment | MolProbity score | 3.280 | 2.819 | 8.39e-11 |
| # Clashes | 122.5 | 8.2 | 5.55e-17 | |
| # Cβ_out | 6.9 | 7.1 | 0.27 | |
| # Rotamer_out | 5.2 | 5.5 | 0.30 | |
| # Ramachandran_out | 16.3 | 14.6 | 0.12 | |
| #Bond-length_out | 10.7 | 0.2 | 3.50e-05 | |
| #Bond-angle_out | 25.6 | 2.0 | 7.01e-06 | |