Table 3.

Summary of MQAP model selections on the 58 single-domain proteins. Numbers in parenthesis are the number of times that the near-best model was selected, where a near-best model is defined if the model is within the top 10 best decoys and has the quality score (TM-score, GDT-HA and MolProbity) not worse than 95% of the best decoy in each category.

Mqap Programs	TM-score	GDT-HA	MolProbity
Best decoy	0.7183 (58)	0.4816 (58)	2.1643 (58)
MQAP_combined	0.6803 (6)	0.4439 (6)	2.8091 (12)
GOAP	0.6734 (4)	0.4389 (1)	2.8323 (4)
Consensus	0.6683 (3)	0.4356 (3)	3.0840 (1)
RWplus	0.6662 (3)	0.4293 (1)	2.8622 (7)
C-score	0.6629 (2)	0.4256 (1)	3.1011 (1)
DOPE	0.6544 (3)	0.4194 (2)	2.9386 (4)