Table 1.
Reference genomes/transcriptomes used for comparative analysis in this study.
| Organism name | Taxon (Phylum) | Lineage (Class/Order/Family) | References/Data source |
|---|---|---|---|
| ANIMAL | |||
| Acropora digitifera | Cnidaria | Anthozoa/Scleractinia/Acroporidae | Shinzato et al., 2011 |
| Acropora millepora | Cnidaria | Anthozoa/Scleractinia/Acroporidae | Hemmrich and Bosch, 2008 |
| Aiptasia pallida | Cnidaria | Anthozoa/Actiniaria/Actiniidae | Hemmrich and Bosch, 2008 |
| Anemonia viridis | Cnidaria | Anthozoa/Actiniaria/Actiniidae | Hemmrich and Bosch, 2008 |
| Montastrea faveolata | Cnidaria | Anthozoa/Scleractinia/Montastraeidae | Hemmrich and Bosch, 2008 |
| Nematostella vectensis | Cnidaria | Anthozoa/Actiniaria/Edwardsiidae | Hemmrich and Bosch, 2008 |
| Porites astreoides | Cnidaria | Anthozoa/Scleractinia/Poritidae | Hemmrich and Bosch, 2008 |
| Elysia chlorotica | Mollusca | Gastropoda/-/Plakobranchidae | Bhattacharya et al., 2013 |
| Amphimedon quennslandica | Porifera | Demospongiae/Haplosclerida/Niphatidae | Hemmrich and Bosch, 2008 |
| Leucosolenia complicata | Porifera | Calcarea/Leucosolenida/Leucosoleniidae | Hemmrich and Bosch, 2008 |
| Oscarella carmela | Porifera | Homoscleromorpha/Homosclerophorida/Plakinidae | Hemmrich and Bosch, 2008 |
| Sycon ciliatum | Porifera | Calcarea/Leucosolenida/Sycettidae | Hemmrich and Bosch, 2008 |
| BACTERIA | |||
| Alcanivorax borkumensis SK2 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Alcanivoracaceae | Schneiker et al., 2006 |
| Alcanivorax dieselolei B5 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Alcanivoracaceae | Lai et al., 2012 |
| Alcanivorax hongdengensis A-11-3 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Alcanivoracaceae | Lai and Shao, 2012 |
| Bermanella marisrubri RED65 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Oceanospirillaceae | Integrated microbial genomes |
| Chromohalobacter israelensis ATCC 43985 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Halomonadaceae | Integrated microbial genomes |
| Chromohalobacter salexigens DSM 3043 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Halomonadaceae | Integrated microbial genomes |
| Endozoicomonas elysicola DSM 22380 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Hahellaceae | Neave et al., 2014 |
| Endozoicomonas numazuensis DSM 25634 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Hahellaceae | Neave et al., 2014 |
| Hahella chejuensis KCTC 2396 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Hahellaceae | Jeong et al., 2005 |
| Hahella ganghwensis DSM 17046 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Hahellaceae | Integrated microbial genomes |
| Halomonas daqiaogenesis CGMCC 1.9150 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Halomonadaceae | Integrated microbial genomes |
| Halomonas elongata DSM 2581 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Halomonadaceae | Schwibbert et al., 2011 |
| Halomonas halocynthiae DSM 14573 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Halomonadaceae | Integrated microbial genomes |
| Kangiella aquimarina DSM 16071 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Alcanivoracaceae | Integrated microbial genomes |
| Kangiella koreensis DSM 16069 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Alcanivoracaceae | Han et al., 2009 |
| Marinomonas mediterranea MMB 1 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Oceanospirillaceae | Integrated microbial genomes |
| Marinomonas posidonica IVIA-Po-181 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Oceanospirillaceae | Integrated microbial genomes |
| Thalassolituus oleivorans MIL-1 | Proteobacteria | Gammaproteobacteria/Oceanospirillales/Oceanospirillaceae | Integrated microbial genomes |
| Vibrio coralliilyticus ATCC BAA-450 | Proteobacteria | Gammaproteobacteria/Vibrionales/Vibrionaceae | Kimes et al., 2012 |
| Vibrio harveyi ATCC BAA-1116 | Proteobacteria | Gammaproteobacteria/Vibrionales/Vibrionaceae | Integrated microbial genomes |
| Vibrio shilonii AK1 | Proteobacteria | Gammaproteobacteria/Vibrionales/Vibrionaceae | Integrated microbial genomes |