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Imputation accuracy using Beagle, FImpute, and Findhap
| Software | Algorithm | Total number of Imputed SNP | Number of correctly imputed SNP | Accuracy |
|---|---|---|---|---|
| Beagle | Population – based | 3,296,330 | 2,531,228 | 76.79 |
| FImpute | Family+population – based | 3,296,330 | 3,096,580 | 93.94 |
| Findhap | Family+population – based | 3,296,330 | 2,790,041 | 84.64 |
SNP, single nucleotide polymorphism.
