Table 2.
Possible functional substitutions between G. nipponicus and G. aculeatus alleles within the introgression site IS1
| Gene postion1 | Gene name | Transcript ID | Amino acid change [PROVEAN Score2] |
|---|---|---|---|
| 1,175,845 | Transglutaminase 8 | ENSGACT00000004923 | V526A [1.373] |
| 1,200,852 | Filamin B, like | ENSGACT00000004976 | D148E [−2.963 *], A938P [6.973 **], N1851S [1.58] |
| ENSGACT00000004983 | K1879E [−2.084], G2464A [3.165 *] | ||
| 1,235,360 | Sarcolemma‐associated protein a | ENSGACT00000005008 | N813S [−1.396] |
| 1,281,299 | Kelch‐like family member 10 [2/5] | ENSGACT00000005082 | D178E [2.7 *], R415P [−1.733], T505I [−1.647] |
| ENSGACT00000005084 | K229Q [−1.76], Q479H [−2.241] | ||
| 1,343,836 | Coiled‐coil domain‐containing 66 | ENSGACT00000005108 | L189R [−4.579 **] |
| 1,355,299 | Inositol hexakisphosphate kinase 1 | ENSGACT00000005112 | P375R [−1.362] |
| 1,439,329 | Potassium channel tetramerisation domain‐containing 6a | ENSGACT00000005237 | S4C [−1.661] |
| 1,465,445 | Stabilin 1 [1/2] | ENSGACT00000005255 | Q577K [1.418], K760R [2.164] |
| 1,482,835 | Stabilin 1 [2/2] | ENSGACT00000005273 | S380L [−2.495], T494P [1.338] |
| 1,499,288 | Nischarin | ENSGACT00000005292 | S298G [−3.199 *], I569N [−1.335], C1080R [1.605] |
| 1,563,301 | Asporin (LRR class 1) | ENSGACT00000005358 | P18H [1.458] |
| 1,578,802 | Osteoglycin | ENSGACT00000005363 | L211M [−1.745] |
| 1,593,763 | Nucleolar protein 8 | ENSGACT00000005381 | E308G [−6.398 **] |
Genes with absolute values of PROVEAN scores > 1.3 are listed here. 1Median position of genes, 2amino acid changes are shown by the amino acid in G. aculeatus, amino acid position, and the amino acid in G. nipponicus. Positive and negative PROVEAN scores indicate that functional mutation occurred in G. aculeatus and G. nipponicus, respectively. *PROVEAN scores > 2.5 or < −2.5. **PROVEAN scores > 4.1 or < −4.1. Bold letters indicate PROVEAN scores whose absolute values are larger than 2.5.