Fig 3. Presence of ICEs and antimicrobial resistance encoding genes in the 51 ST25 S. suis genomes.

The left panel shows inferred genetic relationships between strains, determined as described in Fig 2. The right panel depicts host, country of origin, presence or absence of ICEs and/or resistance genes in the genomes of the strains under investigation. Strains isolated from pigs are depicted by a circle, while strains isolated from humans are depicted by a triangle. Strains isolated in Canada are shown as a white circle or triangle, strains isolated in the United States of America are shown in grey, and strains isolated in Thailand are shown in black. ICEs are depicted in light blue, tetracycline resistance genes are depicted in yellow, erythromycin resistance genes are depicted in light green, all other antimicrobial resistance genes are depicted in pink.