Table 3.
Differential expression of C4 photosynthesis-specific genes between M and BS cells
| Gene | Role | Cell type | ID | M (TPM) | BS (TPM) | Log 2 (M/BS) | Adjusted P |
|---|---|---|---|---|---|---|---|
| CA | Core pathway | M | Pavir.J05107 | 10360.08 | 2559.41 | 1.74 | 0.0043498 |
| PEPC | Core pathway | M | Pavir.Da00871 | 404.89 | 132.94 | 1.35 | 0.0158103 |
| PPDK | Core pathway | M | Pavir.J15849 | 10630.50 | 1774.50 | 2.24 | 1.567E-09 |
| ASP-AT(M) | Core pathway | M | Pavir.Eb03232 | 2699.88 | 559.12 | 1.79 | 5.627E-07 |
| ASP-AT(BS) | Core pathway | BS | Pavir.J06248 | 91.64 | 1045.03 | –3.27 | 1.32E-17 |
| ALA-AT | Core pathway | BS/M | Pavir.Ba00407 | 4.82 | 17.78 | –2.09 | 5.823E-08 |
| NADP-MDH | Core pathway | M | Pavir.Fa00047 | 193.63 | 39.84 | 1.71 | 4.326E-07 |
| NADP-ME | Core pathway | BS | Pavir.Eb00308 | 188.46 | 4081.74 | –4.58 | 3.438E-53 |
| NAD-ME | Core pathway | BS | Pavir.Ia01553 | 18.64 | 695.89 | –4.84 | 8.162E-89 |
| NAD-MDH | Core pathway | BS | Pavir.J08443 | 108.92 | 1566.72 | –4.35 | 0 |
| PEPCK | Core pathway | BS | Pavir.Ia03881 | 9.77 | 59.16 | –2.56 | 5.193E-06 |
| RBCS | Calvin cycle | BS | Pavir.Ca02105 | 279.46 | 8643.50 | –5.18 | 0 |
| RCA | Calvin cycle | BS | Pavir.Hb00014 | 23.07 | 627.48 | –4.64 | 8.738E-75 |
| PRK | Calvin cycle | BS | Pavir.Aa01018 | 68.43 | 1903.17 | –4.86 | 1.096E-41 |
| CP12 | Calvin cycle | BS | Pavir.J38955 | 0.85 | 19.27 | –3.91 | 1.398E-11 |
| RPI | Calvin cycle | BS | Pavir.Bb00418 | 130.41 | 2702.07 | –4.52 | 1.1E-171 |
| RPE | Calvin cycle | BS | Pavir.Ia04312 | 133.34 | 3492.42 | –4.72 | 1.788E-31 |
| TKL | Calvin cycle | BS | Pavir.Da02287 | 44.74 | 1504.46 | –5.28 | 1.22E-242 |
| SBP | Calvin cycle | BS | Pavir.J03580 | 6.71 | 287.19 | –4.91 | 2.529E-50 |
| FBP | Calvin cycle | BS | Pavir.J33737 | 7.74 | 81.39 | –3.36 | 5.467E-24 |
| FBA | Calvin cycle | BS | Pavir.J02023 | 56.93 | 1424.97 | –4.53 | 1.08E-244 |
| PGK | Calvin cycle | M | Pavir.J00566 | 5471.47 | 1559.81 | 1.33 | 0.0048193 |
| GADPH(A) | Calvin cycle | BS | Pavir.Ca01865 | 30.68 | 54.80 | –1.07 | 0.0002747 |
| GADPH(B) | Calvin cycle | M | Pavir.J23272 | 3301.02 | 1316.49 | 1.17 | 4.605E-14 |
| TPI | Calvin cycle | M | Pavir.J26504 | 815.95 | 108.90 | 2.62 | 1.611E-33 |
CA, carbonic anhydrase; PEPC, phosphoenolpyruvate carboxylase; PPDK, pyruvate/orthophosphate dikinase; AspAT, aspartate aminotransferase; AlaAT, alanine aminotransferase; NADP-MDH, NADP-dependent malate dehydrogenase; NADP-ME, NADP-dependent malic enzyme; NAD-MDH, NAD-dependent malate dehydrogenase; NAD-ME, NAD-dependent malic enzyme; PEPCK, phosphoenolpyruvate carboxykinase; RBCS, ribulose bisphosphate carboxylase small chain; RCA, Rubisco activase; PRK, phosphoribulokinase; CP12, Calvin cycle protein CP12; RPI, ribose 5-phosphate isomerase; RPE, ribulose-phosphate 3-epimerase; TKL, transketolase; SBP, sedoheptulose-bisphosphatase; FBP, fructose-1,6-bisphosphatase; FBA, fructose-bisphosphate aldolase; PGK, phosphoglycerate kina; GADPH, glyceraldehyde-3-phosphate dehydrogenase; TPI, triosephosphate isomerase.