Table 1.
Software list for synteny and collinearity visualization.
| Software name | Publishing year | Graphical synteny | Visualization types | Vector graphics |
|---|---|---|---|---|
| MCMuSeC | 2009 | ✕ | ✕ | ✕ |
| OrthoCluster | 2009 | ✓ | Dual bar, linear | ✕ |
| i-ADHoRe 3 | 2011 | ✓ | Dotted hierarchy | ✓ |
| FISH | 2003 | ✕ | ✕ | ✕ |
| ColinearScan | 2006 | ✕ | ✕ | ✕ |
| MCScan | 2008 | ✕ | ✕ | ✕ |
| CYNTENATOR | 2010 | ✕ | ✕ | ✕ |
| SyMAP | 2011 | ✓ | Dual bar | ✕ |
| MCScanX | 2012 | ✓ | Dotted linear circular | ✕ |
| SynChro | 2014 | ✓ | Dual bar | ✕ |
| GSV | 2011 | ✓ | Dual bar | ✕ |
| EasyFig | 2011 | ✓ | Dual bar | ✓ |
| C-Sibelia | 2013 | ✕ | Circos-format | ✕ |
| Gbrowse-syn | 2010 | ✓ | Dual bar | ✕ |
| Kegg | 2000 | ✓ | Network | ✕ |
| Circos | 2009 | ✓ | Circular | ✓ |
| WebLogo | 2004 | ✕ | Textual | ✓ |
| VGSC | 2015 | ✓ | Dotted linear circular | ✓ |