Table 1. Number of genes and transcript isoforms analyzed and differentially expressed between BCG-challenged (BCG) and Control mice within cell type and between microglia and macrophages within challenge group and overlapping counts.
| Comparison | Genes | Transcript isoforms | ||||
|---|---|---|---|---|---|---|
| Analyzed | DE1 or Unique Annotated | DE or Unique Not annotated | Analyzed | DE or Unique Annotated | DE or Unique Not annotated | |
| Microglia Control vs. BCG | 15,293 | 562 | 18 | 39,005 | 317 | 6 |
| Macrophages Control vs. BCG | 13,245 | 3,851 | 286 | 32,743 | 2,381 | 160 |
| Overlap | 353 | 245 | ||||
| Control Microglia vs Macrophages | 15,287 | 9,860 | 0 | 29,110 | 11,113 | 0 |
| BCG Microglia vs. Macrophages | 15,828 | 9,117 | 890 | 42,035 | 9,780 | 735 |
| Overlap | 6,590 | 8,144 | ||||
| Unique to Macrophages Control | 23 | 42 | ||||
| Unique to Microglia Control | 236 | 421 | ||||
| Unique to Macrophages BCG | 3 | 20 | ||||
| Unique to Microglia BCG | 214 | 300 | ||||
DE1: differentially expressed genes or transcript isoforms (FDR-adjusted P-value < 0.05) or uniquely detected in either cell type.