Table 8. Gene Set Enrichment Analysis (GSEA) categories enriched (FDR-adjusted P-value < 0.01, > 10 transcript isoforms) among transcript isoforms under-expressed in microglia relative to peripheral macrophages in BCG-challenged mice.

Category	NG1	P-value	FDR2
Adaptive immune response	21	<0.1E-05	<0.1E-05
Adaptive immune response	20	<0.1E-05	<0.1E-05
Positive regulation of immune response	20	<0.1E-05	<0.1E-05
Regulation of immune response	22	<0.1E-05	<0.1E-05
Regulation of immune system process	46	<0.1E-05	1.05E-03
Chemokine receptor binding	28	<0.1E-05	1.18E-03
Positive regulation of immune system process	37	<0.1E-05	1.34E-03
Positive regulation of response to stimulus	27	<0.1E-05	1.57E-03
KEGG primary immunodeficiency	30	<0.1E-05	1.88E-03
KEGG ribosome	81	<0.1E-05	1.90E-03
Regulation of lymphocyte activation	28	<0.1E-05	2.07E-03
Cellular defense response	38	<0.1E-05	2.28E-03
Lymphocyte activation	47	<0.1E-05	3.78E-03
G protein coupled receptor binding	35	<0.1E-05	4.34E-03
Chemokine activity	27	<0.1E-05	4.62E-03
Positive regulation of multicellular organismal process	47	<0.1E-05	4.63E-03
Cytokine activity	61	<0.1E-05	6.65E-03
B cell activation	18	<0.1E-05	7.59E-03
Locomotory behavior	61	<0.1E-05	8.08E-03
Leukocyte activation	51	<0.1E-05	8.95E-03
KEGG hematopoietic cell lineage	52	<0.1E-05	9.40E-03

¹ NG: number of genes.

² FDR: adjusted P-value.