Table 3. Species level comparison between wild and captive bred rock ptarmigans a).
| Seq_Code | Suggested species | DDBJ Accession | WL4 | WL5 | WL7 | WL8 | YL1 | YL2 | YL3 | YL4 | YL5 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ptarmigan-OTU0 | Unidentified sp. in Coriobacteriaceae (Olsenella sp.) | LC055731 | 29,747 | 2,181 | 7,776 | 5,203 | 1 | 135 | 96 | 52 | 43 |
| ptarmigan-OTU1 | Actinomyces sp.b) | LC055732 | 11,145 | 1,684 | 2,025 | 1,186 | 1 | 0 | 0 | 1 | 0 |
| ptarmigan-OTU2 | Unidentified species in Clostridiales | LC055733 | 5 | 1 | 2 | 0 | 2,027 | 2,853 | 10,997 | 2,447 | 4,583 |
| ptarmigan-OTU3 | Unidentified species in Synergistaceae (Cloacibacillus sp.) | LC055734 | 11,507 | 3,274 | 5,601 | 4,669 | 0 | 0 | 1 | 2 | 0 |
| ptarmigan-OTU4 | Bacteroides sp. | LC055735 | 11,479 | 1,937 | 4,569 | 3,058 | 1 | 0 | 0 | 2 | 0 |
| ptarmigan-OTU5 | Megasphaera sp.b) | LC055736 | 9,501 | 1,382 | 2,420 | 1,272 | 0 | 0 | 0 | 0 | 0 |
| ptarmigan-OTU6 | Bifidobacterium sp. | LC055737 | 6 | 1 | 0 | 0 | 373 | 1,090 | 9,049 | 2,537 | 231 |
| ptarmigan-OTU7 | Bifidobacterium sp. | LC055738 | 8,934 | 963 | 2,736 | 1,421 | 0 | 0 | 0 | 1 | 0 |
| ptarmigan-OTU8 | Slackia sp. (S. equolifaciens) | LC055739 | 5,410 | 623 | 1,169 | 929 | 1 | 0 | 0 | 1 | 0 |
| ptarmigan-OTU9 | Faecalibacterim sp. | LC055740 | 5 | 2 | 0 | 1 | 1,386 | 3,254 | 7,905 | 5,426 | 1,103 |
| ptarmigan-OTU10 | Unidentified species in Ruminococcaceae (Sporobacter termitidis) | LC055741 | 4,127 | 618 | 826 | 664 | 1 | 0 | 71 | 2 | 5 |
| ptarmigan-OTU11 | Asteroleplasma sp. | LC055742 | 2,437 | 824 | 1,193 | 2,533 | 0 | 0 | 0 | 1 | 0 |
| ptarmigan-OTU12 | Unidenfieid species in Clostridiales b) (Roseburia sp.) | LC055743 | 4,885 | 591 | 1,161 | 573 | 7 | 30 | 176 | 54 | 25 |
| ptarmigan-OTU13 | Unidentified species in Ruminococcaceae | LC055744 | 27 | 7 | 11 | 7 | 1,484 | 2,611 | 5,266 | 2,630 | 3,010 |
| ptarmigan-OTU14 | Dialister sp. | LC055745 | 890 | 1,046 | 2,454 | 1,550 | 0 | 0 | 0 | 0 | 0 |
a) Values are numbers of sequence read identified. Total reads for each bird are shown in Supplementary Table 1. b) Similar sequence was detected from Capercaillie [25]. WL4-–WL8, Wild Japanese rock ptarmigans living in Tateyama Mountains. YL1–YL5, Captive bred Svalbard rock ptarmigans at the Preservation and Research Center, The City of Yokohama. Details, see text.