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. 2016 Jan 15;12(3):1097–1120. doi: 10.1021/acs.jctc.5b01047

Table 13. Mean Absolute Errors of the Interaction Energies (kcal/mol) for the A24-CHNOF, S66, S66a8, JSCH-2005-CHNOF, S7L, and S30L-CHNOF Sets and of the Folding Enthalpies and Energies (kcal/mol) for the AF6 Set, Calculated at the Reference Geometries Using PM7 and OMx-Dn.

    method
      OM2
OM3
subset N PM7 D2 D3 D3T D2 D3 D3T
A24-CHNOF
overall 21 1.10 0.56 0.56 0.56 0.69 0.67 0.67
overall*a 20 0.64 0.43 0.43 0.43 0.49 0.47 0.46
H-bonded 5 2.66 1.39 1.40 1.40 1.36 1.32 1.32
H-bonded*a 4 0.73 0.97 0.95 0.95 0.52 0.46 0.46
mixed 10 0.49 0.19 0.17 0.17 0.41 0.34 0.34
dispersion 6 0.84 0.47 0.52 0.52 0.61 0.67 0.67
S66
overall 66 0.79 1.02 0.82 0.85 1.05 0.82 0.81
electrostatic 23 0.95 1.91 1.80 1.80 1.99 1.75 1.75
mixed 20 0.71 0.39 0.26 0.27 0.64 0.37 0.39
dispersion 23 0.70 0.68 0.32 0.39 0.45 0.27 0.23
S66a8
overall 528 0.78 0.77 0.60 0.61 0.80 0.62 0.60
electrostatic 184 0.84 1.44 1.34 1.34 1.52 1.33 1.33
mixed 160 0.60 0.32 0.22 0.22 0.48 0.26 0.26
dispersion 184 0.86 0.50 0.20 0.21 0.36 0.22 0.18
JSCH-2005-CHNOF
overall 134 1.93 2.27 1.72 1.81 1.86 1.33 1.37
overall*b 128 1.83 2.07 1.52 1.61 1.62 1.10 1.13
H-bonded base pairs 31 2.62 3.50 3.11 3.05 3.12 2.53 2.47
interstrand base pairs 32 2.46 0.99 0.72 0.72 0.90 0.70 0.70
stacked base pairs 54 1.15 2.11 1.25 1.50 1.32 0.64 0.75
amino acid pairs 17 2.19 2.95 2.51 2.55 3.08 2.56 2.62
amino acid pairs*b 11 1.17 1.01 0.65 0.65 0.96 0.49 0.52
S7L
overall 7 4.91 3.19 2.25 2.38 1.97 0.66 0.79
π–π 5 4.79 4.39 2.05 2.72 2.63 0.29 0.95
S30L-CHNOF
overall 24 15.44 6.69 5.32 5.01 4.90 4.36 3.59
π–π stacking 7 18.54 6.13 3.58 3.04 4.20 5.08 3.17
H-bondedc 8 13.17 6.93 6.95 6.49 5.84 4.49 4.62
charged complexesc 8 21.76 9.55 9.46 8.41 5.71 6.38 4.56
AF6
folding enthalpies 6 1.18 0.20 0.45 0.34 0.79 0.76 1.00
folding energies 6 1.05 0.18 0.44 0.34 0.96 0.93 1.17
a

Without the HF···HF complex, see text.

b

Without the complexes of charged amino acids, see text.

c

Two complexes correspond to both H-bonded and charged complexes subsets; see ref (49).