Table 1. Novel variants identified in the current study.
| No. | Chr | Position | Reference | Observed | Location | Gene | Frequency | Read depth | Pool 1 | Pool 2 | Pool 3 | Pool 4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Chr3 | 8790685 | C | T | Intergenic | — | 0.009 | 13,557 | • | — | — | — |
| 2 | Chr3 | 8791451 | C | A | Downstream | OXTR | 0.022 | 63,594 | • | • | • | • |
| 3 | Chr3 | 8791453 | T | C | Downstream | OXTR | 0.02 | 64,498 | • | • | • | • |
| 4 | Chr3 | 8791455 | T | C | Downstream | OXTR | 0.02 | 64,354 | • | • | • | • |
| 5 | Chr3 | 8793620 | A | T | UTR3 | OXTR | 0.007 | 36,037 | — | • | • | — |
| 6 | Chr3 | 8793928 | T | C | UTR3 | OXTR | 0.017 | 30,415 | • | • | • | • |
| 7 | Chr3 | 8793930 | T | C | UTR3 | OXTR | 0.01 | 30,303 | • | • | — | • |
| 8 | Chr3 | 8793950 | T | A | UTR3 | OXTR | 0.008 | 30,705 | — | • | — | • |
| 9 | Chr3 | 8794920 | T | G | Intronic | OXTR | 0.019 | 35,201 | • | • | • | • |
| 10 | Chr3 | 8795600 | G | A | Intronic | OXTR | 0.008 | 48,582 | — | • | — | — |
| 11 | Chr3 | 8795876 | C | T | Intronic | OXTR | 0.006 | 39,391 | — | • | — | — |
| 12 | Chr3 | 8797707 | T | C | Intronic | OXTR | 0.006 | 47,351 | — | — | — | • |
| 13 | Chr3 | 8798395 | G | A | Intronic | OXTR | 0.019 | 48,715 | • | • | — | • |
| 14 | Chr3 | 8798903 | T | A | Intronic | OXTR | 0.01 | 29,912 | • | • | — | • |
| 15 | Chr3 | 8800614 | T | C | Intronic | OXTR | 0.009 | 50,854 | — | — | — | • |
| 16 | Chr3 | 8801278 | G | A | Intronic | OXTR | 0.009 | 46,203 | — | — | — | • |
| 17 | Chr3 | 8802373 | G | A | Intronic | OXTR | 0.012 | 54,288 | — | — | • | — |
| 18 | Chr3 | 8802838 | T | A | Intronic | OXTR | 0.005 | 58,478 | — | — | • | — |
| 19 | Chr3 | 8803740 | T | G | Intronic | OXTR | 0.01 | 53,209 | • | • | — | — |
| 20 | Chr3 | 8803900 | A | C | Intronic | OXTR | 0.009 | 44,269 | • | — | — | — |
| 21 | Chr3 | 8805516 | A | G | Intronic | OXTR | 0.021 | 38,133 | — | — | — | • |
| 22 | Chr3 | 8805681 | A | G | Intronic | OXTR | 0.009 | 29,916 | — | — | • | — |
| 23 | Chr3 | 8805870 | C | T | Intronic | OXTR | 0.017 | 44,279 | • | • | • | • |
| 24 | Chr3 | 8805871 | C | T | Intronic | OXTR | 0.016 | 44,208 | • | • | • | • |
| 25 | Chr3 | 8805874 | A | C | Intronic | OXTR | 0.014 | 43,421 | • | • | • | • |
| 26 | Chr3 | 8807814 | A | G | Intronic | OXTR | 0.008 | 45,546 | — | — | — | • |
| 27 | Chr3 | 8808386 | C | G | Intronic | OXTR | 0.008 | 25,157 | — | • | — | — |
| 28 | Chr3 | 8809426 | G | T | Exonic | OXTR | 0.006 | 31,586 | — | • | — | — |
The positions, single-nucleotide changes compared against reference genome, and frequencies of a total of 28 novel variants were shown. The black dot indicates that the mutation was observed in the given pool, whereas the dash indicates that the mutation was not found.
Abbreviations: Chr, chromosome; OXTR, oxytocin receptor.