Table 1.
Summary statistics of datasets used in study
| Platforms | Types | Total number of datasets | Experimental condition | Number of datasets |
|---|---|---|---|---|
| Public RNA-seq (59 in total) | Paired-end without strand-specific | 30 | Time course/whole body | 30 |
| Paired-end with strand-specific | 29 | Tissue/head | 9 | |
| Tissue/ovary | 2 | |||
| Tissue/accessory glands | 1 | |||
| Tissue/testis | 1 | |||
| Tissue/carcass | 4 | |||
| Tissue/digestive system | 4 | |||
| Tissue/CNS | 2 | |||
| Tissue/fat body | 3 | |||
| Tissue/imaginal discs | 1 | |||
| Tissue/salivary glands | 2 | |||
| In-house RNA-seq (2 in total) | Paired-end with poly(A)-enriched | 1 | Tissue/brain | 1 |
| Paired-end with ribo-zero | 1 | Tissue/brain | 1 | |
| ChIP-seq (32 in total) | H3K36me3 | 3 | Embryos | 1 |
| Larvae | 1 | |||
| Mixed Adult | 1 | |||
| H3K4me3 | 14 | Embryos | 7 | |
| Larvae | 3 | |||
| Pupae | 1 | |||
| Adult Female | 1 | |||
| Adult Male | 1 | |||
| Mixed Adult | 1 | |||
| RNA polymerase II | 15 | Embryos | 8 | |
| Larvae | 5 | |||
| Pupae | 1 | |||
| Mixed Adult | 1 |
Detailed information of these datasets can be seen in Additional file 3: Table S2 and Table S5