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. Author manuscript; available in PMC: 2017 Mar 1.
Published in final edited form as: Structure. 2016 Feb 11;24(3):423–436. doi: 10.1016/j.str.2016.01.007

Table 1.

Agreement between K27-Ub2 structures and NMR data

Structure or Conformational Ensemble Data a rb Qc
RDC, aligned tensors d RDC-SVD 0.98 0.11
RDC, angle-optimized e RDC-SVD 0.99 0.10
15N Relaxation, angle-optimized e RDC-SVD 0.95 0.22
15N Relaxation, aligned tensors d Relaxation 0.90 0.31
15N Relaxation, angle-optimized e Relaxation 0.91 0.29
SES, 1-conformer ensemble RDC-SVD 0.98 0.12
SES, 1-conformer ensemble Pred-RDC 0.97 0.16
SES, 2-conformer ensemble Pred-RDC 0.99 0.07
a

For RDC-SVD, the agreement is calculated between experimental RDCs and RDCs back-calculated from NH vectors using SVD. For Pred-RDC, the agreement is calculated between experimental RDCs and RDCs predicted directly from structure using PATI(Berlin et al., 2009).

b

Pearson’s correlation coefficient.

c

Quality factor for RDCs (Clore and Garrett, 1999) or 15N relaxation data (Ghose et al., 2001). Lower Q means better agreement.

d

Structures labeled ‘aligned tensors’ were obtained by orienting the two Ubs such that the corresponding axes of the alignment tensors (RDC) or diffusion tensors (15N relaxation) reported by each Ub analyzed separately were parallel to each other (Fushman et al., 2004).

e

Structures labeled ‘angle-optimized’ were generated using ELMDOCK (Berlin et al., 2011) (for 15N relaxation data) or PATIDOCK (Berlin et al., 2010) (for RDC data) to obtain the best agreement between the experimental and predicted relaxation or RDC data for both Ubs taken together.