Table 3. The MINT output listing nucleotide pairs.
| Nucleotide pair | Interacting edges | Configuration | % of frames |
|---|---|---|---|
| G527/A535 | Sugar/WC | trans | 81% |
| G527/A535 | Sugar/Sugar | trans | 15% |
| C528/A535 | Sugar/Sugar | trans | 97% |
| C528/A533 | Sugar/Sugar | cis | 13% |
| U531/G1207 | Sugar/Sugar | cis | 16% |
| A532/U1056 | WC*Hoogsteen/WC*Sugar | cis | 20% |
| A532/A1055 | WC*Hoogsteen/Sugar | trans | 17% |
| A532/A1055 | WC*Hoogsteen/Sugar | cis | 16% |
| A533/A535 | Sugar/Sugar | trans | 55% |
| A533/C536 | Sugar/WC*Hoogsteen | trans | 22% |
Each pair is classified by interacting nucleotide edges, configuration, and the percentage of trajectory frames in which the pair was detected. The * notation is used if only one hydrogen bond between nucleotides is found, involving corner atoms, and it is impossible to assign the edge uniquely.