Table 3. The DSC-measured total and cooperative enthalpy, entropy and Gibbs energy of association of CG and AT base pairs, extrapolated to the standard temperature of 25°C.
CG duplexes | −ΔHCG (kJ/mol-bp) | −ΔSCG (J/K·mol-bp) | −ΔGCG (J/K·mol-bp) | ||
---|---|---|---|---|---|
coop | total | coop | total | coop | |
9-CG | |||||
5′-CGCCGCCGC-3′ | 18.4 | 25.8 | 39.7 | 62.5 | 6.6 |
3′-GCGGCGGCG-5′ | |||||
12-CG | |||||
5′-CGCCGCCGCCGC-3′ | 19.2 | 27.4 | 40.4 | 63.4 | 6.3 |
3′-GCGGCGGCGGCG-5′ | |||||
15-CG | |||||
5′-CGCCGCCGCCGCCGC-3′ | 18.7 | 26.3 | 41.8 | 66.1 | 6.2 |
3′-GCGGCGGCGGCGGCG-5′ | |||||
Averaged | 18.8±0.5 | 26.5±1.0 | 40.6±1.0 | 64.0±1.5 | 6.4±0.2 |
AT duplexes | −ΔHAT | −ΔSAT | −ΔGAT | ||
coop | total | coop | total | coop | |
9-AT | |||||
5′-CGCAAACGC-3′ | 31.5 | 35.3 | 86 | 98 | 5.8 |
3′-GCGTTTCGG-5′ | |||||
12-AT/AT | |||||
5′-CGCAAAAAACGC-3′ | 30.1 | 34.3 | 86 | 98 | 4.5 |
3′-GCGTTTTTTGCG-5′ | |||||
12-AT/TA | |||||
5′-CGCAAATTTCGC-3′ | 29.0 | 32.5 | 82 | 93 | 4.6 |
3′-GCGTTTAAAGCG-5′ | |||||
12-TA/AT | |||||
5′-CGCTTTAAACGC-3′ | 25.1 | 28.8 | 70 | 80 | 4.2 |
3′-GCGAAATTTGCG-5′ | |||||
12-A/T | |||||
5′-CGCATATATCGC-3′ | 25.1 | 28.8 | 68 | 80 | 4.8 |
3′-GCGTATATAGCG-5′ | |||||
15-AT/TA/AT | |||||
5′-CGCAAATTTAAACGC-3′ | 27.8 | 32.4 | 78 | 93 | 4.5 |
3′-GCGTTTAAATTTGCG-5′ | |||||
15-AT/AT/AT | |||||
5′-CGCAAAAAAAAACGC-3′ | 28.1 | 32.0 | 79 | 91 | 4.5 |
3′-GCGTTTTTTTTTGCG-5′ | |||||
Averaged | 28.1±1.8 | 32.0±2.0 | 78±5.0 | 90±6.0 | 4.7±0.3 |