Table 2. Genes from top 10 candidate regions for each of the branches on which 3P-CLR was run for the Eurasian population tree.
| Window size | Position (hg19) | Genes |
|---|---|---|
| European | Chr9:125424000–126089000 | ZBTB26, RABGAP1, GPR21, STRBP, OR1L1, OR1L3, OR1L4, OR1L6, OR5C1, PDCL, OR1K1, RC3H2, ZBTB6 |
| Chr22:35,528,100–35,754,100 | HMGXB4, TOM1 | |
| Chr8:52,361,800–52,932,100 | PXDNL, PCMTD1 | |
| Chr2:74,450,100–74,972,700 | INO80B, WBP1, MOGS, MRPL53, CCDC142, TTC31, LBX2, PCGF1, TLX2, DQX1, AUP1, HTRA2, LOXL3, DOK1, M1AP, SEMA4F, SLC4A5, DCTN1, WDR54, RTKN | |
| Chr1:35,382,000–36,592,200 | DLGAP3, ZMYM6NB, ZMYM6, ZMYM1, SFPQ, ZMYM4, KIAA0319L, NCDN, TFAP2E, PSMB2, C1orf216, CLSPN, AGO4, AGO1, AGO3, TEKT2, ADPRHL2, COL8A2 | |
| Chr15:29,248,000–29,338,300 | APBA2 | |
| Chr12:111,747,000–113,030,000 | BRAP, ACAD10, ALDH2, MAPKAPK5, TMEM116, ERP29, NAA25, TRAFD1, RPL6, PTPN11, RPH3A, CUX2, FAM109A, SH2B3, ATXN2 | |
| Chr9:90,909,300–91,210,000 | SPIN1, NXNL2 | |
| Chr19:33,504,200–33,705,700 | RHPN2, GPATCH1, WDR88, LRP3, SLC7A10 | |
| Chr9:30,085,400–31,031,600 | — | |
| East Asian | Chr15:63,693,900–64,188,300 | USP3, FBXL22, HERC1 |
| Chr10:94,830,500–95,093,900 | CYP26A1, MYOF | |
| Chr2:72,353,500–73,170,800 | CYP26B1, EXOC6B, SPR, EMX1, SFXN5 | |
| Chr2:72,353,500–73,170,800 | PCDH15 | |
| Chr1:234,209,000–234,396,000 | SLC35F3 | |
| Chr5:117,344,000–117,714,000 | — | |
| Chr17:60,907,300–61,547,900 | TANC2, CYB561 | |
| Chr2:44,101,400–44,315,200 | ABCG8, LRPPRC | |
| Chr11:6,028,090–6,191,240 | OR56A1, OR56B4, OR52B2 | |
| Chr2:108,905,000–109,629,000 | LIMS1, RANBP2, CCDC138, EDAR, SULT1C2, SULT1C4, GCC2 | |
| Eurasian | Chr2:72,353,500–73,170,800 | CYP26B1, EXOC6B, SPR, EMX1, SFXN5 |
| Chr20:53,876,700–54,056,200 | — | |
| Chr10:22,309,300–22,799,200 | EBLN1, COMMD3, COMMD3-BMI1, BMI1, SPAG6 | |
| Chr3:25,726,300–26,012,000 | NGLY1, OXSM | |
| Chr18:67,523,300–67,910,500 | CD226, RTTN | |
| Chr10:65,794,400–66,339,100 | — | |
| Chr11:39,587,400–39,934,300 | — | |
| Chr7:138,806,000–139,141,000 | TTC26, UBN2, C7orf55, C7orf55-LUC7L2, LUC7L2, KLRG2 | |
| Chr9:90,909,300–91,202,200 | SPIN1, NXNL2 | |
| Chr4:41,454,200–42,195,300 | LIMCH1, PHOX2B, TMEM33, DCAF4L1, SLC30A9, BEND4 |
All positions were rounded to the nearest 100 bp. Windows were merged together if the central SNPs that define them were contiguous.