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. 2016 Mar 12;17:227. doi: 10.1186/s12864-016-2564-y

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© Romero-Campero et al. 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 7 — Potentially Light-regulated Transcription Factors and Transcriptional Regulators in ChlamyNET. Twenty-one TFs and TRs exhibiting a high similarity with light regulated TFs and TRs in Arabidopsis were identified in ChlamyNET. These genes are not uniformly distributed over ChlamyNET. Clusters 9 (blue), 3 (red) and 7 (green) were significantly enriched in these potentially ligh-regulated TFs and TRs, so that they are expected to be involved mainly in carbon/nitrogen metabolism, signalling by phosphorylation and protein degradation. The central location of several light-regulated TFs and TRs such as CrHY5 (Cre12.510200) and CrCRY1 (Cre06.g295200) suggests that they are highly authoritative hub genes. Indeed CrHY5 and CrCRY1 have 133 and 57 neighbouring genes respectively