Table 1.
The species and datasets used in this study.
| Reference Species | Common name/Host |
Source* | # Proteins |
Longest isoform |
|
|---|---|---|---|---|---|
| Outgroup | Candida dubliniensis | yeast | Genbank (NCBI v106) | 5,860 | - |
| Candida glabrata | yeast | Genbank (NCBI v106) | 5,213 | - | |
| Saccharomyces cerevisiae | yeast | Ensembl release 77 | 6,692 | - | |
| Drosophila melanogaster | fruit fly | Ensembl release 77 | 26,950 | 13,937 | |
| Hosts | Homo sapiens | human | Genbank (NCBI v106) | 71,338 | 20,190 |
| Canis familiaris | dog | Genbank (NCBI v103) | 42,467 | 19,877 | |
| Mus musculus | mouse | Genbank (NCBI v104) | 77,623 | 23,167 | |
| Bos taurus | cow | Genbank (NCBI v103) | 63,118 | 23,116 | |
| Ovis aries | sheep | Genbank (NCBI v100) | 22,692 | 19,108 | |
| Sus scrofa | pig | Genbank (NCBI v104) | 38,230 | 22,917 | |
| Mesocricetus auratus | hampster | Genbank (NCBI v100) | 25,834 | 19,305 | |
| Nematodes | Trichuris suis | human, pig | Nematode.net** | 9,832 | - |
| Trichuris muris | human, mouse | WormBase ParaSite | 11,004 | - | |
| Trichuris trichiura | human | WormBase ParaSite | 9,856 | - | |
| Trichinella spiralis | human | Nematode.net | 16,380 | - | |
| Ascaris suum | human, pig | Wormbase WS238 | 18,542 | - | |
| Ascaris lumbricoides | human | WormBase ParaSite** | 23,604 | - | |
| Brugia malayi | human | Wormbase WS238 | 17,959 | 14,216 | |
| Brugia pahangi | dog | WormBase ParaSite** | 14,747 | - | |
| Loa loa | human | Wormbase WS238 | 15,445 | - | |
| Wuchereria bancrofti | human | WormBase ParaSite** | 13,134 | - | |
| Onchocerca volvulus | human | Wormbase WS241 | 12,994 | - | |
| Onchocerca ochengi | human | WormBase ParaSite** | 13,990 | - | |
| Strongyloides ratti | human | Wormbase WS238 | 8,188 | - | |
| Strongyloides stercoralis | human | WormBase ParaSite** | 14,490 | 13,114 | |
| Caenorhabditis briggsae | non-parasite | Wormbase WS238 | 21,961 | - | |
| Caenorhabditis elegans | non-parasite | Wormbase WS241 | 26,983 | 20,493 | |
| Dictyocaulus viviparus | cow | Nematode.net** | 14,171 | - | |
| Teladorsagia circumcincta | sheep | Nematode.net** | 25,535 | - | |
| Haemonchus contortus | sheep | Wormbase WS241 | 24,775 | 21,897 | |
| Necator Americanus | human, hampster | Nematode.net | 19,153 | - | |
| Ancylostoma ceylanicum | human | Nematode.net** | 15,892 | - |
*
Genbank (Benson et al., 2015), Ensembl (Cunningham et al., 2015), WormBase ParaSite (http://parasite.wormbase.org), and Wormbase (Harris et al., 2014), Nematode.net (Martin et al, 2015; http://nematode.net/).
**
Unpublished and obtained from the referenced database