Table 5.
The distribution of insertions and deletions (gap regions) specific to nematodes among the different KEGG categories. Sizable indels are defined as gaps greater than 4 amino acid long. Indel rates are defined as indel/cluster numbers (the average frequency of indels in a cluster).
| KEGG category |
indel PFC |
del | ins | del rate |
ins rate |
sizable del |
small del |
sizable del rate |
small del rate |
sizable ins |
small ins |
sizable ins rate |
small ins rate |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Metabolism | 1448 | 26306 | 15208 | 18.17 | 10.50 | 13887 | 12419 | 9.59 | 8.58 | 8012 | 7196 | 5.53 | 4.97 |
| Genetic Information Processing |
1638 | 29378 | 16508 | 17.94 | 10.08 | 15227 | 14151 | 9.30 | 8.64 | 8543 | 7965 | 5.22 | 4.86 |
| Environmental Information Processing |
414 | 7791 | 4479 | 18.82 | 10.82 | 4218 | 3573 | 10.19 | 8.63 | 2410 | 2069 | 5.82 | 5.00 |
| Cellular Processes |
305 | 5658 | 3643 | 18.55 | 11.94 | 3059 | 2599 | 10.03 | 8.52 | 1920 | 1723 | 6.30 | 5.65 |
| Organismal Systems |
87 | 1571 | 1224 | 18.06 | 14.07 | 866 | 705 | 9.95 | 8.10 | 636 | 588 | 7.31 | 6.76 |
| Total (excluding Human Diseases) |
3892 | 70704 | 41062 | 18.17 | 10.55 | 37257 | 33447 | 9.57 | 8.59 | 21521 | 19541 | 5.53 | 5.02 |