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. 2015 Jul 10;4(3):267–298. doi: 10.3390/antibiotics4030267

Table 3.

Changes in selected indigenous gut microflora populations following exposure to CDI therapeutic antimicrobial agents in vitro and in vivo.

Antimicrobial Agent Negatively Impacted Populations Positively Impacted Populations Refs
Anaerobes Facultative Anaerobes Anaerobes Facultative Anaerobes
Vancomycin Bifidobacteria, Bacteroides, Clostridia Lactobacilli, Enterococci No effect LFE PD. Lactobacilli (PD) [111,151]
Metronidazole+ Bifidobacteria, Bacteroides, Clostridia No effect (one study E. coli) No effect LFE [110,152]
Fidaxomicin Bifidobacteria Enterococci No effect LFE [146]

PD, post-dosing; LFE, lactose-fermenting Enterobacteriaceae. Underlined bacterial groups were substantially reduced (≥3-log10 cfu/mL). + In studies where bioactive metronidazole was detected.