Table 2.

Summary of Replicate Experiments

Total samples analyzed in replicate	13
Total chips analyzed for replicate experiments	26
Within-chip reproducibility
Mitochondrial base pairs tiled in duplicate per chip	12,935 bp
Total within-chip duplicate base pairs analyzed	26*12,935 = 336,310 bp
Total within-chip duplicate base pairs called	311,814 bp (92.71%)
Discordant calls within chips	8 bp (0.0025%)
Between-chips reproducibility
Total mitochondrial base pairs tiled per chip	28,386 bp
Total base pairs analyzed in one set of 13 chips	13*28,386 = 369,018 bp
Total base pairs assigned in first set of chips	350,010 bp (94.84%)
Total base pairs assigned in second set of chips	355,086 bp (96.22%)
Total base pairs assigned in both sets	345,094 bp (93.51%)
Discordant base calls between chips	10 bp (0.0028%)