Table 2.
|
Number of elements in each class
|
Total
|
|||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Structuresa | Families | I | II | III | IV | V | VI | VII | VIII | IX | X | XI | No. | Percentage (%)b |
| Intact elements | 34 | 4 | 9 | 1 | 2 | 1 | 17 | 1 | 14 | 82 | 73 | 238 | 23.8 | |
| Intact elements without TSDs | 1 | 0 | 2 | 0 | 1 | 0 | 2 | 0 | 0 | 5 | 3 | 14 | 1.4 | |
| Solo LTRs | 7 | 0 | 42 | 0 | 0 | 7 | 46 | 5 | 103 | 80 | 58 | 348 | 34.8 | |
| Solo LTRs without TSDs | 1 | 0 | 7 | 0 | 0 | 0 | 7 | 1 | 9 | 12 | 5 | 42 | 4.2 | |
| One LTR partially deleted | 4 | 1 | 5 | 0 | 0 | 0 | 3 | 0 | 14 | 21 | 5 | 53 | 5.3 | |
| One LTR completely deleted | 4 | 0 | 13 | 0 | 1 | 0 | 18 | 1 | 8 | 16 | 46 | 107 | 10.7 | |
| Both LTRs partially deleted | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 3 | 0.3 | |
| One LTR deleted, another partially deleted | 1 | 1 | 4 | 0 | 0 | 1 | 0 | 1 | 1 | 7 | 6 | 22 | 2.2 | |
| LTR remnants | 4 | 0 | 27 | 0 | 0 | 4 | 13 | 3 | 35 | 54 | 33 | 173 | 17.3 | |
| Total | 57 | 6 | 109 | 1 | 4 | 13 | 107 | 12 | 184 | 278 | 229 | 1000 | 100.0 | |
a
Does not include a small number of difficult-to-identify internal remnants or incompletely sequenced elements
b
Percentage of total elements in these families