Table 3.
The Results of Block Partitioning for Different Genotyping Error Rates Based on Population P0 With α = 80% and β = 10%
|
Family design
|
Population design
|
||||
|---|---|---|---|---|---|
| Genotyping error rate | No. of SNPs | Average no. of tag SNPs using haplotype | Average no. of tag SNPs using genotype | Average no. of tag SNPs using haplotype | Average no. of tag SNPs using genotype |
| 0% | 103 | 31 | 30 | 31 | 30 |
| 0.5% | 103 | 32 | 31 | 32 | 31 |
| 1% | 103 | 33 | 32 | 33 | 33 |
| 2% | 103 | 36 | 35 | 36 | 36 |
| 5% | 103 | 43 | 43 | 43 | 43 |
The SNPs with minor allele frequency >5% are used. The density of SNPs is set as one SNP per kilobase.