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. 2004 May;14(5):942–950. doi: 10.1101/gr.1858004

Figure 2.

Figure 2

The Miniseq: We use a miniseq representation of genomic sequence in various stages of the gene build in order to reduce search space and increase processing speed. We BLAST a sequence of interest against a genomic region and pad the resulting hits with 200 bp. We then join the padded hits together to form a “mini genomic” sequence containing only exon sequence plus a small amount of intron sequence.