Table 3.

Exact Exon Boundary Comparison to Manual Annotations

	Sn	Sp	Sn (coding)	Sp (coding)
chr13	0.35	0.38	0.52	0.48
chr14	0.38	0.36	0.57	0.44
chr20	0.34	0.34	0.51	0.46
chr6	0.39	0.30	0.51	0.40

All annotated exons are compared against all the predicted exons. An annotated exon is considered as found if there is at least one predicted exon with exact matching boundaries. The sensitivity (Sn) is calculated as the number of found exons over the total number of annotated exons, and the specificity (Sp) as the number of found exons over the total number of predicted exons. We carried out comparisons for all exons coding and noncoding (first two columns) and for coding exons only (last two columns).