Table 5.

Base-Pair Level Comparisons to Manual Annotations

	Sn	Sp	Sn (coding)	Sp (coding)
chr13	0.46	0.70	0.55	0.75
chr14	0.50	0.68	0.58	0.72
chr20	0.47	0.69	0.58	0.69
chr6	0.50	0.60	0.56	0.64

We took the projections of the exon predictions and annotations over the genomic sequence and compare the overlap of both. The sensitivity (Sn) is calculated as the overlap length over the total extent of the annotation, whereas the specificity (Sp) is calculated as the overlap length over the total extent of the predictions. We give these values for coding regions only and for coding and noncoding regions together.